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Structure of Arp7-Arp9-Snf2(HSA)-RTT102 subcomplex of SWI/SNF chromatin remodeler.
Biology and Chemistry Report
4I6M
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSCRIPTION/HYDROLASE
    Text actin-related, chromatin remodeling, TRANSCRIPTION-HYDROLASE complex

    Polymeric Molecules

    Chain A
    Description Actin-related protein 7 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 54613.9 
    Source Method genetically manipulated  
    Entity Name Actin-like protein ARP7, Chromatin structure-remodeling complex protein ARP7, SWI/SNF complex component ARP7 
    Chain B
    Description Actin-like protein ARP9 
    Fragment UNP residues 1-246, 275-467 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 50152.4 
    Source Method genetically manipulated  
    Entity Name Chromatin structure-remodeling complex protein ARP9, SWI/SNF complex component ARP9 
    Chain C
    Description Actin-like protein ARP9 
    Fragment HSA domain residues 575-667 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 12820.4 
    Source Method genetically manipulated  
    Entity Name Chromatin structure-remodeling complex protein ARP9, SWI/SNF complex component ARP9 
    Chain D
    Description Regulator of Ty1 transposition protein 102 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 18005.4 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    PO4  PHOSPHATE ION  O4 P   94.97  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A ARP7_YEAST D6W444     
    B ARP9_YEAST D6VZK8     
    C SNF2_YEAST D6W2Y8     
    D RT102_YEAST D6VV52     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    3.6.4      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6200   ATP Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    6325   Chromatin Organization  Any Process That Results in the Specification Formation or Maintenance of the Physical Structure of Eukaryotic Chromatin. 
    6337   Nucleosome Disassembly  The Controlled Breakdown of Nucleosomes the Beadlike Structural Units of Eukaryotic Chromatin Composed of Histones and Dna. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    6368   Transcription Elongation From RNA Polymerase Ii Promoter  The Extension of an RNA Molecule After Transcription Initiation and Promoter Clearance At an RNA Polymerase Ii Promoter by the Addition of Ribonucleotides Catalyzed by RNA Polymerase Ii. 
    16568   Chromatin Modification  The Alteration of DNA Protein or Sometimes RNA in Chromatin Which May Result in Changing the Chromatin Structure. 
    42766   Nucleosome Mobilization  The Movement of Nucleosomes Along a DNA Fragment. 
    43044   ATP Dependent Chromatin Remodeling  Dynamic Structural Changes to Eukaryotic Chromatin That Require Energy From the Hydrolysis of ATP Ranging From Local Changes Necessary For Transcriptional Regulation to Global Changes Necessary For Chromosome Segregation Mediated by ATP Dependent Chromatin Remodelling Factors. 
    45944   Positive Regulation of Transcription From RNA Polymerase Ii Promoter  Any Process That Activates or Increases the Frequency Rate or Extent of Transcription From an RNA Polymerase Ii Promoter. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    16514   Swi/snf Complex  A Swi/snf Type Complex That Contains Nine or More Proteins Including Both Conserved (core) and Nonconserved Components; the Swi2/snf2 Atpase Is One of the Core Components. 
    16586   Rsc Complex  A Protein Complex Similar to But More Abundant Than the Swi/snf Complex. the Rsc Complex Is Generally Recruited to RNA Polymerase Iii Promoters and Is Specifically Recruited to RNA Polymerase Ii Promoters by Transcriptional Activators and Repressors; It Is Also Involved in Non Homologous End Joining. 
    5198   Structural Molecule Activity  The Action of a Molecule That Contributes to the Structural Integrity of a Complex or Assembly Within or Outside a Cell. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    15616   DNA Translocase Activity  Catalysis of the Reaction: ATP + H2o = Adp + Phosphate to Drive Movement Along a Single or Double Stranded DNA Molecule. 
    Chain B
    GO ID   Ontology GO Term Definition
    6200   ATP Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    6325   Chromatin Organization  Any Process That Results in the Specification Formation or Maintenance of the Physical Structure of Eukaryotic Chromatin. 
    6337   Nucleosome Disassembly  The Controlled Breakdown of Nucleosomes the Beadlike Structural Units of Eukaryotic Chromatin Composed of Histones and Dna. 
    6338   Chromatin Remodeling  Dynamic Structural Changes to Eukaryotic Chromatin Occurring Throughout the Cell Division Cycle. These Changes Range From the Local Changes Necessary For Transcriptional Regulation to Global Changes Necessary For Chromosome Segregation. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    6368   Transcription Elongation From RNA Polymerase Ii Promoter  The Extension of an RNA Molecule After Transcription Initiation and Promoter Clearance At an RNA Polymerase Ii Promoter by the Addition of Ribonucleotides Catalyzed by RNA Polymerase Ii. 
    16568   Chromatin Modification  The Alteration of DNA Protein or Sometimes RNA in Chromatin Which May Result in Changing the Chromatin Structure. 
    16584   Nucleosome Positioning  Ordering of Successions of Nucleosomes Into Regular Arrays So That Nucleosomes Are Positioned At Defined Distances From One Another. 
    42766   Nucleosome Mobilization  The Movement of Nucleosomes Along a DNA Fragment. 
    43044   ATP Dependent Chromatin Remodeling  Dynamic Structural Changes to Eukaryotic Chromatin That Require Energy From the Hydrolysis of ATP Ranging From Local Changes Necessary For Transcriptional Regulation to Global Changes Necessary For Chromosome Segregation Mediated by ATP Dependent Chromatin Remodelling Factors. 
    45944   Positive Regulation of Transcription From RNA Polymerase Ii Promoter  Any Process That Activates or Increases the Frequency Rate or Extent of Transcription From an RNA Polymerase Ii Promoter. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    16514   Swi/snf Complex  A Swi/snf Type Complex That Contains Nine or More Proteins Including Both Conserved (core) and Nonconserved Components; the Swi2/snf2 Atpase Is One of the Core Components. 
    16586   Rsc Complex  A Protein Complex Similar to But More Abundant Than the Swi/snf Complex. the Rsc Complex Is Generally Recruited to RNA Polymerase Iii Promoters and Is Specifically Recruited to RNA Polymerase Ii Promoters by Transcriptional Activators and Repressors; It Is Also Involved in Non Homologous End Joining. 
    5198   Structural Molecule Activity  The Action of a Molecule That Contributes to the Structural Integrity of a Complex or Assembly Within or Outside a Cell. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    15616   DNA Translocase Activity  Catalysis of the Reaction: ATP + H2o = Adp + Phosphate to Drive Movement Along a Single or Double Stranded DNA Molecule. 
    Chain D
    GO ID   Ontology GO Term Definition
    6200   ATP Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    6337   Nucleosome Disassembly  The Controlled Breakdown of Nucleosomes the Beadlike Structural Units of Eukaryotic Chromatin Composed of Histones and Dna. 
    6338   Chromatin Remodeling  Dynamic Structural Changes to Eukaryotic Chromatin Occurring Throughout the Cell Division Cycle. These Changes Range From the Local Changes Necessary For Transcriptional Regulation to Global Changes Necessary For Chromosome Segregation. 
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    6368   Transcription Elongation From RNA Polymerase Ii Promoter  The Extension of an RNA Molecule After Transcription Initiation and Promoter Clearance At an RNA Polymerase Ii Promoter by the Addition of Ribonucleotides Catalyzed by RNA Polymerase Ii. 
    7059   Chromosome Segregation  The Process in Which Genetic Material in the Form of Chromosomes Is Organized Into Specific Structures and Then Physically Separated and Apportioned to Two or More Sets. in Eukaryotes Chromosome Segregation Begins with the Condensation of Chromosomes Includes Chromosome Separation and Ends When Chromosomes Have Completed Movement to the Spindle Poles. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    16514   Swi/snf Complex  A Swi/snf Type Complex That Contains Nine or More Proteins Including Both Conserved (core) and Nonconserved Components; the Swi2/snf2 Atpase Is One of the Core Components. 
    16586   Rsc Complex  A Protein Complex Similar to But More Abundant Than the Swi/snf Complex. the Rsc Complex Is Generally Recruited to RNA Polymerase Iii Promoters and Is Specifically Recruited to RNA Polymerase Ii Promoters by Transcriptional Activators and Repressors; It Is Also Involved in Non Homologous End Joining. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    15616   DNA Translocase Activity  Catalysis of the Reaction: ATP + H2o = Adp + Phosphate to Drive Movement Along a Single or Double Stranded DNA Molecule. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain D
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain ATCC 204508 / S288C
    Details Snf2 Is in Msc1 of Pcdf with the Full Length Rtt102 in Msc2.
    Gene rtt102, rtt102/ygr275w, ygr275w;
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)ril
    Host Vector Type Plasmid
    Host Plasmid Name pCDF


    Chain C
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain ATCC 204508 / S288C
    Details Snf2 Is in Msc1 of Pcdf with the Full Length Rtt102 in Msc2.
    Gene snf2, snf2/yor290c, swi2, tye3, yor290c, gam1, haf1
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)ril
    Host Vector Type Plasmid
    Host Plasmid Name pCDF


    Chain B
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain ATCC 204508 / S288C
    Details Arp7 and Arp9 Are in Msc2 and Msc1 Respectively of Prsf.
    Gene arp9, arp9/ymr033w, swp59, ym9973.07, ymr033w
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)ril
    Host Vector Type Plasmid
    Host Plasmid Name pRSF


    Chain A
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain ATCC 204508 / S288C
    Details Arp7 and Arp9 Are in Msc2 and Msc1 Respectively of Prsf.
    Gene snf2, snf2/yor290c, swi2, tye3, yor290c, gam1, haf1
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)ril
    Host Vector Type Plasmid
    Host Plasmid Name pRSF


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    XV - 854465     Snf2p SNF2    
    XVI - 856146     Arp7p ARP7    
    VII - 853192     Rtt102p RTT102    
    XIII - 855049     Arp9p ARP9