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Crystal structure of K103N/Y181C mutant of HIV-1 reverse transcriptase in complex with rilpivirine (TMC278) analogue
Biology and Chemistry Report
4I2Q
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE, TRANSFERASE/INHIBITOR
    Text P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, DNA recombination, RNA-directed DNA polymerase, DNA polymerase, endonuclease, hydrolase, multifunctional enzyme, transferase, TRANSFERASE-INHIBITOR complex

    Polymeric Molecules

    Chain A
    Description Gag-Pol polyprotein 
    Fragment p66 (UNP Residues 600-1154) 
    Mutation K702N, K771A, K772A, Y780C, C879S 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 63914.9 
    Source Method genetically manipulated  
    Entity Name Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT, p51 RT 
    Chain B
    Description Gag-Pol polyprotein 
    Fragment p51 (UNP Residues 600-1077) 
    Mutation C879S 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 50040.1 
    Source Method genetically manipulated  
    Entity Name Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT, p51 RT, p15, Integrase, IN 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    1BT  (2E)-3-(4-{[6-(1,3-benzothiazol-5-ylamino)-9H-purin-2-yl]amino}-3,5-dimethylphenyl)prop-2-enenitrile  C23 H18 N8 S   438.51  View 
    EDO  1,2-ETHANEDIOL  C2 H6 O2   62.07  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A POL_HV1B1 P03366     
    B POL_HV1B1 P03366     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.7.49      
    2.7.7.7      
    3.1.26.13      
    2.7.7.49      
    2.7.7.7      
    3.1.26.13      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6278   RNA Dependent DNA Replication  A DNA Replication Process That Uses RNA As a Template For RNA Dependent DNA Polymerases (e.g. Reverse Transcriptase) That Synthesize the New Strands. 
    3676   Nucleic Acid Binding  Interacting Selectively and Non Covalently with Any Nucleic Acid. 
    3964   RNA Directed DNA Polymerase Activity  Catalysis of the Reaction: Deoxynucleoside Triphosphate + Dna(n) = Diphosphate + Dna(n+1). Catalyzes RNA Template Directed Extension of the 3' End of a DNA Strand by One Deoxynucleotide At a Time. 
    4523   RNA DNA Hybrid Ribonuclease Activity  Catalysis of the Endonucleolytic Cleavage of RNA in RNA DNA Hybrids to 5' Phosphomonoesters. 
    Chain B
    GO ID   Ontology GO Term Definition
    6278   RNA Dependent DNA Replication  A DNA Replication Process That Uses RNA As a Template For RNA Dependent DNA Polymerases (e.g. Reverse Transcriptase) That Synthesize the New Strands. 
    3964   RNA Directed DNA Polymerase Activity  Catalysis of the Reaction: Deoxynucleoside Triphosphate + Dna(n) = Diphosphate + Dna(n+1). Catalyzes RNA Template Directed Extension of the 3' End of a DNA Strand by One Deoxynucleotide At a Time. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Hiv 1
    Scientific Name Human immunodeficiency virus type 1 bh10  
    Gene gag-pol
    Host Scientific Name Escherichia coli  


    Chain A
    Common Name Hiv 1
    Scientific Name Human immunodeficiency virus type 1 bh10  
    Gene gag-pol
    Host Scientific Name Escherichia coli