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Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity.
Biology and Chemistry Report
4HY1
  •   Structure Details   Hide

    Structure Keywords

    Keywords isomerase/isomerase inhibitor
    Text ATP-binding, Nucleotide-binding, Topoisomerase, ATP-binding domain, isomerase-isomerase inhibitor complex

    Polymeric Molecules

    Chain A,B
    Description Topoisomerase IV, subunit B 
    Fragment unp residues 1002-1383 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 43951.2 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    19X  6-({4-[(3R)-3-aminopyrrolidin-1-yl]-5-chloro-6-ethyl-7H-pyrrolo[2,3-d]pyrimidin-2-yl}sulfanyl)-1H-isoindol-1-one  C20 H19 Cl N6 O S   426.92  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B Q2A1P5_FRATH Q2A1P5     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  5.99.1.3      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6265   DNA Topological Change  The Process in Which a Transformation Is Induced in the Topological Structure of a Double Stranded DNA Helix Resulting in a Change in Linking Number. 
    5694   Chromosome  A Structure Composed of a Very Long Molecule of DNA and Associated Proteins (e.g. Histones) That Carries Hereditary Information. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    3918   DNA topoisomerase type II (ATP-hydrolyzing) activity  Catalysis of a DNA Topological Transformation by Transiently Cleaving a Pair of Complementary DNA Strands to Form a Gate Through Which a Second Double Stranded DNA Segment Is Passed After Which the Severed Strands in the First DNA Segment Are Rejoined; Product Release Is Coupled to ATP Binding and Hydrolysis; Changes the Linking Number in Multiples of 2. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Francisella tularensis subsp. holarctica  
    Strain LVS
    Gene dna topoisomerase iv subunit b pare, ftl_1726
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)