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Designed Phosphodeoxyribosyltransferase
Biology and Chemistry Report
4HX9
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text Non natural and design enzyme, Rossmann Fold, Phosphodeoxyribosyltransferase, TRANSFERASE

    Polymeric Molecules

    Chain A,B,C,D,E,F,G,H
    Description Nucleoside deoxyribosyltransferase 
    Mutation F13R,E91Q,D92G,V93T,N123S 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 18024.4 
    Source Method genetically manipulated  
    Entity Name N-deoxyribosyltransferase 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    PG4  TETRAETHYLENE GLYCOL  C8 H18 O5   194.23  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D,E,F,G,H NTD_LACLE Q9R5V5     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B C D E F G H  2.4.2.6      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D,E,F,G,H
    GO ID   Ontology GO Term Definition
    9117   Nucleotide Metabolic Process  The Chemical Reactions and Pathways Involving a Nucleotide a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Glycose Moiety; May Be Mono Di or Triphosphate; This Definition Includes Cyclic Nucleotides (nucleoside Cyclic Phosphates). 
    9159   Deoxyribonucleoside Monophosphate Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of a Deoxyribonucleoside Monophosphate a Compound Consisting of a Nucleobase Linked to a Deoxyribose Sugar Esterified with Phosphate On the Sugar. 
    43173   Nucleotide Salvage  Any Process Which Produces a Nucleotide a Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Glycose Moiety From Derivatives of It Without De Novo Synthesis. 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 
    50144   Nucleoside Deoxyribosyltransferase Activity  Catalysis of the Reaction: 2 Deoxy D Ribosyl Base1 + Base2 = 2 Deoxy D Ribosyl Base2 + Base1. 
    70694   Deoxyribonucleoside 5' Monophosphate N Glycosidase Activity  Catalysis of the Reaction: a Deoxyribonucleoside 5' Monophosphate + H2o = Deoxyribose 5 Monophosphate + a Purine or Pyrimidine Base. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D,E,F,G,H
    Scientific Name Lactobacillus leichmannii  
    Gene ntd
    Host Scientific Name Escherichia coli  
    Host Strain Bli5
    Host Vector Type Plasmid
    Host Plasmid Name pET24a