An Information Portal to 108124 Biological Macromolecular Structures

Discovery of potent Mcl-1 inhibitors using fragment-based methods and structure-based design
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Text regulation of apoptosis, maintenance of viability, APOPTOSIS, APOPTOSIS-INHIBITOR complex

    Polymeric Molecules

    Chain A,B,C,D,E,F
    Description Induced myeloid leukemia cell differentiation protein Mcl-1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17494.0 
    Source Method genetically manipulated  
    Entity Name Bcl-2-like protein 3, Bcl2-L-3, Bcl-2-related protein EAT/mcl1, mcl1/EAT 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    19H  6-chloro-3-[3-(4-chloro-3,5-dimethylphenoxy)propyl]-1H-indole-2-carboxylic acid  C20 H19 Cl2 N O3   392.28  View 
    EDO  1,2-ETHANEDIOL  C2 H6 O2   62.07  View 
    PGE  TRIETHYLENE GLYCOL  C6 H14 O4   150.17  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D,E,F MCL1_HUMAN B2R6B2     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D,E,F
    GO ID   Ontology GO Term Definition
    42981   Regulation of Apoptotic Process  Any Process That Modulates the Occurrence or Rate of Cell Death by Apoptotic Process. 

  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D,E,F
    Common Name Human
    Scientific Name Homo sapiens  
    Gene mcl1, bcl2l3
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 Codonplus (de3) Ril
    Host Vector Type Plasmid
    Host Plasmid Name pDEST-HisMBP

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q21 4170     myeloid cell leukemia 1 MCL1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs2737820 LS-SNP   dbSNP   A 173 E - > D Helix 47% (Exposed) 1 150551488
    rs201906883 LS-SNP   dbSNP   A 178 S - > A Helix 0% (Buried) 1 150551475
    rs149195238 LS-SNP   dbSNP   A 187 R - > Q Helix 23% (Intermediate) 1 150551447
    rs76955524 LS-SNP   dbSNP   A 196 T - > A Coil 32% (Intermediate) 1 150551421
    rs140911000 LS-SNP   dbSNP   A 206 S - > G Helix 2% (Buried) 1 150551391
    rs11580946 LS-SNP   dbSNP   A 227 A - > V Helix 58% (Exposed) 1 150551327 19H
    rs140449444 LS-SNP   dbSNP   A 231 M - > L Helix 28% (Intermediate) 1 150550965 19H
    rs201430561 LS-SNP   dbSNP   A 247 S - > F Helix 32% (Intermediate) 1 150550916
    rs142581495 LS-SNP   dbSNP   A 284 E - > Q 3/10 Helix 48% (Exposed) 1 150550806
    rs150698207 LS-SNP   dbSNP   A 299 V - > L Helix 4% (Buried) 1 150550761
    rs138470363 LS-SNP   dbSNP   A 299 V - > G Helix 4% (Buried) 1 150550760