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Crystal Structure of H2Db-NPM6W
Biology and Chemistry Report
4HUV
  •   Structure Details   Hide

    Structure Keywords

    Keywords Immune system
    Text viral immunity, T cell, H2Db, influenza, viral escape, Immune system

    Polymeric Molecules

    Chain A,D
    Description H-2 class I histocompatibility antigen, D-B alpha chain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 32601.6 
    Source Method genetically manipulated  
    Entity Name H-2D(B) 
    Chain B,E
    Description Beta-2-microglobulin 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11660.4 
    Source Method genetically manipulated  
    Chain C,F
    Description NPM6W variant peptide 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1081.1 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,D HA11_MOUSE P01899     
    B,E B2MG_MOUSE P01887     
    C,F Q5Q157_9INFA Q5Q157     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    Immune Epitopes (B-cell and T-Cell)

    Immune Epitope Database (IEDB)
    Epitope ID 4631    
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain B,E
    GO ID   Ontology GO Term Definition
    2376   Immune System Process  Any Process Involved in the Development or Functioning of the Immune System an Organismal System For Calibrated Responses to Potential Internal or Invasive Threats. 
    2474   Antigen Processing and Presentation of Peptide Antigen Via Mhc Class I  The Process in Which an Antigen Presenting Cell Expresses a Peptide Antigen On Its Cell Surface in Association with an Mhc Class I Protein Complex. Class I Here Refers to Classical Class I Molecules. 
    5576   Extracellular Region  The Space External to the Outermost Structure of a Cell. For Cells Without External Protective or External Encapsulating Structures This Refers to Space Outside of the Plasma Membrane. This Term Covers the Host Cell Environment Outside an Intracellular Parasite. 
    42612   Mhc Class I Protein Complex  A Transmembrane Protein Complex Composed of a Mhc Class I Alpha Chain and an Invariant Beta2 Microglobin Chain and with or Without a Bound Peptide Antigen. Class I Here Refers to Classical Class I Molecules. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B,E
    Common Name Mouse
    Scientific Name Mus musculus  
    Gene b2m
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET


    Chain A,D
    Common Name Mouse
    Scientific Name Mus musculus  
    Gene h2-d1
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    2 2 F1-F3|2 60.55 cM 12010     beta-2 microglobulin B2M    
    17 17 B1|17 18.61 cM 14964     histocompatibility 2, D region locus 1 H2-D1