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The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
Biology and Chemistry Report
4HUB
  •   Structure Details   Hide

    Structure Keywords

    Keywords RIBOSOME
    Text 50S ribosomal subunit, ribonucleoprotein, ribosomal protein, RNA binding, tRNA binding, metal binding, RIBOSOME

    Polymeric Molecules

    Chain 0
    Description 23S Ribosomal RNA 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polyribonucleotide 
    Formula Weight 942260.0 
    Source Method natural source  
    Chain H
    Description 50S ribosomal protein L10e 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 19942.9 
    Source Method natural source  
    Chain I
    Description 50S ribosomal protein L11P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17097.7 
    Source Method natural source  
    Entity Name Hmal11 
    Chain J
    Description 50S ribosomal protein L13P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16249.3 
    Source Method natural source  
    Entity Name Hmal13 
    Chain K
    Description 50S ribosomal protein L14P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14216.4 
    Source Method natural source  
    Entity Name Hl27, Hmal14 
    Chain L
    Description 50S ribosomal protein L15P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 18005.5 
    Source Method natural source  
    Entity Name Hl9, Hmal15 
    Chain M
    Description 50S ribosomal protein L15e 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 22404.5 
    Source Method natural source  
    Entity Name 50S ribosomal protein LC12 
    Chain N
    Description 50S ribosomal protein L18P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 20641.1 
    Source Method natural source  
    Entity Name Hl12, Hmal18 
    Chain O
    Description 50S ribosomal protein L18e 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12439.0 
    Source Method natural source  
    Entity Name Hl29, L19 
    Chain P
    Description 50S ribosomal protein L19e 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16796.7 
    Source Method natural source  
    Entity Name Hl24, Hmal19 
    Chain Q
    Description 50S ribosomal protein L21e 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10567.9 
    Source Method natural source  
    Entity Name Hl31 
    Chain 9
    Description 5S Ribosomal RNA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 39303.6 
    Source Method natural source  
    Chain R
    Description 50S ribosomal protein L22P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16967.1 
    Source Method natural source  
    Entity Name Hl23, Hmal22 
    Chain S
    Description 50S ribosomal protein L23P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 9612.6 
    Source Method natural source  
    Entity Name Hl25, Hmal23, L21 
    Chain T
    Description 50S ribosomal protein L24P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13671.1 
    Source Method natural source  
    Entity Name Hl15, Hl16, Hmal24 
    Chain U
    Description 50S ribosomal protein L24e 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 7365.0 
    Source Method natural source  
    Entity Name Hl21/Hl22 
    Chain V
    Description 50S ribosomal protein L29P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 7889.9 
    Source Method natural source  
    Entity Name Hl33, Hmal29 
    Chain W
    Description 50S ribosomal protein L30P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17063.0 
    Source Method natural source  
    Entity Name Hl16, Hl20, Hmal30 
    Chain X
    Description 50S ribosomal protein L31e 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10384.7 
    Source Method natural source  
    Entity Name Hl30, L34 
    Chain Y
    Description 50S ribosomal protein L32e 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 26456.0 
    Source Method natural source  
    Entity Name Hl5 
    Chain Z
    Description 50S ribosomal protein L37Ae 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10189.3 
    Source Method natural source  
    Chain 1
    Description 50S ribosomal protein L37e 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6330.2 
    Source Method natural source  
    Entity Name L35e 
    Chain A
    Description 50S ribosomal protein L2P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 25354.9 
    Source Method natural source  
    Entity Name Hl4, Hmal2 
    Chain 2
    Description 50S ribosomal protein L39e 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6133.1 
    Source Method natural source  
    Entity Name Hl39e, Hl46e 
    Chain 3
    Description 50S ribosomal protein L44e 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10815.3 
    Source Method natural source  
    Entity Name HLA, La 
    Chain 4,5
    Description 50S ribosomal protein L12 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 5975.4 
    Source Method natural source  
    Entity Name Hmal12 
    Chain B
    Description 50S ribosomal protein L3P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 37396.8 
    Source Method natural source  
    Entity Name Hl1, Hmal3 
    Chain C
    Description 50S ribosomal protein L4P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 26457.3 
    Source Method natural source  
    Entity Name Hl6, Hmal4 
    Chain D
    Description 50S ribosomal protein L5P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 19551.8 
    Source Method natural source  
    Entity Name Hl13, Hmal5 
    Chain E
    Description 50S ribosomal protein L6P 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 19961.9 
    Source Method natural source  
    Entity Name Hl10, Hmal6 
    Chain F
    Description 50S ribosomal protein L7Ae 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12792.1 
    Source Method natural source  
    Entity Name Hs6 
    Chain G
    Description 50S ribosomal protein L10E 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 26454.8 
    Source Method natural source  
    Entity Name Ribosomal protein L10, Acidic ribosomal protein P0 homolog, HMal10, L10E 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)

     
  •   Gene Details   Hide

    Natural Source

    Chain 4,5
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain 3
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain 2
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain 1
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain Z
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain Y
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain X
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain W
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain J
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain I
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain H
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain G
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain F
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain E
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain D
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain C
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain B
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain A
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain 9
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain 0
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain K
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain L
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain M
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain N
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain O
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain P
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain Q
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain R
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain S
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain T
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain U
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809
    Chain V
    Scientific Name Haloarcula marismortui  
    Strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    I - 3130436     50S ribosomal protein L10 RPL10E    
    I - 3128412     50S ribosomal protein L17 RPL11P    
    I - 3130528     50S ribosomal protein L13 RPL13P    
    I - 3128380     50S ribosomal protein L14 RPL14P    
    I - 3128809     50S ribosomal protein L15 RPL15P    
    I - 3129041     50S ribosomal protein L15 RPL15E    
    I - 3127918     HSal18 RPL18P    
    I - 3130533     50S ribosomal protein L18 RPL18E    
    I - 3127911     50S ribosomal protein L19 RPL19E    
    I - 3129654     50S ribosomal protein L21 RPL21E    
    I - 3128443     50S ribosomal protein L22 RPL22P    
    I - 3128415     50S ribosomal protein L23 RPLW    
    I - 3128440     50S ribosomal protein L24 RPL24P    
    I - 3128342     50S ribosomal protein L29 RPMC    
    I - 3127531     50S ribosomal protein L30 RPL30P    
    I - 3128100     50S ribosomal protein L31 RPL31E    
    I - 3128514     50S ribosomal protein L32 RPL32E    
    I - 3130549     50S ribosomal protein L39 RPL39E    
    I - 3129532     50S ribosomal protein L44 RPL44E    
    I - 3128427     50S ribosomal protein L2 RPL2P    
    I - 3128366     50S ribosomal protein L3P RPL3P    
    I - 3128386     50S ribosomal protein L4 RPL4LP    
    I - 3128287     HSal5 RPL5P    
    I - 3127517     50S ribosomal protein L6 RPL6P    
    I - 3130242     50S ribosomal protein L7 RPL7AE    
    I - 3128417     acidic ribosomal protein P0 RPLP0