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Crystal Structure of a Pyrrolidone-carboxylate peptidase 1 (target ID NYSGRC-012831) from Xenorhabdus bovienii SS-2004 in space group P21
Biology and Chemistry Report
4HPS
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text Structural Genomics, NYSGRC, PSI-Biology, New York Structural Genomics Research Consortium, HYDROLASE

    Polymeric Molecules

    Chain A,B,C,D
    Description Pyrrolidone-carboxylate peptidase 
    Fragment UNP residues 1-206 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24747.3 
    Source Method genetically manipulated  
    Entity Name 5-oxoprolyl-peptidase, Pyroglutamyl-peptidase I 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CL  CHLORIDE ION  Cl   35.45  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D D3V0W1_XENBS D3V0W1     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B C D  3.4.19.3      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D
    GO ID   Ontology GO Term Definition
    6508   Proteolysis  The Hydrolysis of Proteins Into Smaller Polypeptides And/or Amino Acids by Cleavage of Their Peptide Bonds. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    8233   Peptidase Activity  Catalysis of the Hydrolysis of a Peptide Bond. a Peptide Bond Is a Covalent Bond Formed When the Carbon Atom From the Carboxyl Group of One Amino Acid Shares Electrons with the Nitrogen Atom From the Amino Group of a Second Amino Acid. 
    8234   Cysteine Type Peptidase Activity  Catalysis of the Hydrolysis of Peptide Bonds in a Polypeptide Chain by a Mechanism in Which the Sulfhydryl Group of a Cysteine Residue At the Active Center Acts As a Nucleophile. 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D
    Scientific Name Xenorhabdus bovienii  
    Strain SS-2004
    Gene pcp, xbj1_1667
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Pril
    Host Vector Type Plasmid
    Host Plasmid Name pSGC-His