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Crystal Structure of a Pyrrolidone-carboxylate peptidase 1 (target ID NYSGRC-012831) from Xenorhabdus bovienii SS-2004 in space group P21
Biology and Chemistry Report
4HPS
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text Structural Genomics, NYSGRC, PSI-Biology, New York Structural Genomics Research Consortium, HYDROLASE

    Polymeric Molecules

    Chain A,B,C,D
    Description Pyrrolidone-carboxylate peptidase 
    Fragment UNP residues 1-206 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24747.3 
    Source Method genetically manipulated  
    Entity Name 5-oxoprolyl-peptidase, Pyroglutamyl-peptidase I 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CL  CHLORIDE ION  Cl   35.45  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D D3V0W1_XENBS D3V0W1     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B C D  3.4.19.3      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D
    GO ID   Ontology GO Term Definition
    6508   Proteolysis  The Hydrolysis of Proteins Into Smaller Polypeptides And/or Amino Acids by Cleavage of Their Peptide Bonds. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5829   Cytosol  The Part of the Cytoplasm That Does Not Contain Organelles But Which Does Contain Other Particulate Matter Such As Protein Complexes. 
    8233   Peptidase Activity  Catalysis of the Hydrolysis of a Peptide Bond. a Peptide Bond Is a Covalent Bond Formed When the Carbon Atom From the Carboxyl Group of One Amino Acid Shares Electrons with the Nitrogen Atom From the Amino Group of a Second Amino Acid. 
    8234   Cysteine Type Peptidase Activity  Catalysis of the Hydrolysis of Peptide Bonds in a Polypeptide Chain by a Mechanism in Which the Sulfhydryl Group of a Cysteine Residue At the Active Center Acts As a Nucleophile. 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 
    16920   Pyroglutamyl Peptidase Activity  Catalysis of the Release of the N Terminal Pyroglutamyl Group From a Peptide or Protein. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D
    Scientific Name Xenorhabdus bovienii  
    Strain SS-2004
    Gene pcp, xbj1_1667
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Pril
    Host Vector Type Plasmid
    Host Plasmid Name pSGC-His