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An Information Portal to 105097 Biological Macromolecular Structures

GR DNA Binding Domain - TSLP nGRE Complex
Biology and Chemistry Report
4HN5
  •   Structure Details   Hide

    Structure Keywords

    Keywords Transcription/DNA
    Text Glucocorticoid receptor, steroid receptors, DNA, nGRE, Repression, Transcription, Transcription-DNA complex

    Polymeric Molecules

    Chain A,B
    Description Glucocorticoid receptor 
    Fragment Glucocorticoid Receptor DNA Binding Domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13032.1 
    Source Method genetically manipulated  
    Entity Name GR, Nuclear receptor subfamily 3 group C member 1 
    Chain C
    Description DNA (5'-D(*CP*GP*CP*CP*TP*CP*CP*GP*GP*GP*AP*GP*AP*GP*CP*T)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 4900.2 
    Source Method synthetic  
    Chain D
    Description DNA (5'-D(*AP*GP*CP*TP*CP*TP*CP*CP*CP*GP*GP*AP*GP*GP*CP*G)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 4900.2 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B GCR_HUMAN A0ZXF9     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    3700   Sequence Specific DNA Binding Transcription Factor Activity  Interacting Selectively and Non Covalently with a Specific DNA Sequence in Order to Modulate Transcription. the Transcription Factor May or May Not Also Interact Selectively with a Protein or Macromolecular Complex. 
    8270   Zinc Ion Binding  Interacting Selectively and Non Covalently with Zinc (zn) Ions. 
    43565   Sequence Specific DNA Binding  Interacting Selectively and Non Covalently with DNA of a Specific Nucleotide Composition E.g. Gc Rich DNA Binding or with a Specific Sequence Motif or Type of DNA E.g. Promotor Binding or Rdna Binding. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene nr3c1, grl
    Host Scientific Name Escherichia coli  
    Host Strain Bl 21


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    5 5q31.3 2908     nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) NR3C1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs113048309 LS-SNP   dbSNP   A 425 S - > P Coil 62% (Exposed) 5 142693645 ZN
    rs104893913 LS-SNP   dbSNP   A 477 R - > H Helix 6% (Buried) 5 142689700 ZN