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Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N4-OH
Biology and Chemistry Report
4HIB
  •   Structure Details   Hide

    Structure Keywords

    Keywords LYASE/LYASE INHIBITOR
    Text alpa-beta barrel, tim barrel, decarboxylase, LYASE-LYASE INHIBITOR complex

    Polymeric Molecules

    Chain A,B
    Description Uridine 5'-monophosphate synthase 
    Fragment UNP residues 190-480 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 34054.4 
    Source Method genetically manipulated  
    Entity Name UMP synthase, Orotate phosphoribosyltransferase, OPRT, OPRTase, Orotidine 5'-phosphate decarboxylase, ODC, OMPdecase 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    16B  N-hydroxycytidine 5'-(dihydrogen phosphate)  C9 H14 N3 O9 P   339.20  View 
    CL  CHLORIDE ION  Cl   35.45  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B UMPS_HUMAN B5LY68     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  4.1.1.23      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene umps, ok/sw-cl.21
    Host Scientific Name Escherichia coli  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    3 3q13 7372     uridine monophosphate synthetase UMPS    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs201260688 LS-SNP   dbSNP   A 39 G - > S Helix 23% (Intermediate) 3 124456786
    rs200421426 LS-SNP   dbSNP   A 68 S - > C Beta Ladder 5% (Buried) 3 124456874 16B
    rs140804035 LS-SNP   dbSNP   A 87 S - > N 3/10 Helix 8% (Buried) 3 124456931
    rs111660155 LS-SNP   dbSNP   A 90 M - > V Beta Ladder 0% (Buried) 3 124456939
    rs200305064 LS-SNP   dbSNP   A 97 I - > N 3/10 Helix 7% (Buried) 3 124456961
    rs201047833 LS-SNP   dbSNP   A 129 I - > V Coil 7% (Buried) 3 124457056 16B
    rs202135467 LS-SNP   dbSNP   A 166 Q - > K Helix 15% (Intermediate) 3 124458951
    rs201332523 LS-SNP   dbSNP   A 174 R - > Q Coil 16% (Intermediate) 3 124458976
    rs200929871 LS-SNP   dbSNP   A 190 T - > S Coil 60% (Exposed) 3 124459024
    rs202158549 LS-SNP   dbSNP   A 197 A - > V Helix 0% (Buried) 3 124459045
    rs201303915 LS-SNP   dbSNP   A 209 V - > A Beta Ladder 2% (Buried) 3 124461033 CL
    rs200479810 LS-SNP   dbSNP   A 229 G - > A Bend 6% (Buried) 3 124461093 16B
    rs121917891 LS-SNP   dbSNP   A 240 G - > R Bend 10% (Intermediate) 3 124462773 CL
    rs144643225 LS-SNP   dbSNP   A 244 N - > Y Beta 36% (Exposed) 3 124462785
    rs201516429 LS-SNP   dbSNP   A 250 I - > T Helix 0% (Buried) 3 124462804
    rs138671830 LS-SNP   dbSNP   A 253 R - > Q Turn 39% (Exposed) 3 124462813
    rs3772809 LS-SNP   dbSNP   A 257 I - > V Beta Ladder 0% (Buried) 3 124462824
    rs142909683 LS-SNP   dbSNP   A 270 R - > P Helix 42% (Exposed) 3 124462864