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Crystal Structure of PDE10A with a biaryl ether inhibitor (1-(1-(3-(4-(benzo[d]thiazol-2-ylamino)phenoxy)pyrazin-2-yl)piperidin-4-yl)ethanol)
Biology and Chemistry Report
4HF4
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE/HYDROLASE INHIBITOR
    Text PDE10A, phosphodiesterase 10A, biaryl ethers, HYDROLASE-HYDROLASE INHIBITOR complex

    Polymeric Molecules

    Chain A,B
    Description cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 36857.7 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    15H  (1S)-1-(1-{3-[4-(1,3-benzothiazol-2-ylamino)phenoxy]pyrazin-2-yl}piperidin-4-yl)ethanol  C24 H25 N5 O2 S   447.55  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    SO4  SULFATE ION  O4 S   96.06  View 
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B PDE10_HUMAN Q6FHX1     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  3.1.4.17      
    A B  3.1.4.35      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene pde10a
    Host Scientific Name Escherichia coli  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6q26 10846     phosphodiesterase 10A PDE10A    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs113840141 LS-SNP   dbSNP   A 451 Q - > R Coil 80% (Exposed) 6 165809845
    rs61733392 LS-SNP   dbSNP   A 477 P - > A Helix 18% (Intermediate) 6 165808716
    rs140135628 LS-SNP   dbSNP   A 484 V - > I Helix 1% (Buried) 6 165808695
    rs79937339 LS-SNP   dbSNP   A 486 R - > Q Helix 54% (Exposed) 6 165808688
    rs200615367 LS-SNP   dbSNP   A 600 I - > V Turn 5% (Buried) 6 165792840
    rs113894012 LS-SNP   dbSNP   A 603 T - > A Turn 83% (Exposed) 6 165792831
    rs138994439 LS-SNP   dbSNP   A 654 R - > H Helix 35% (Intermediate) 6 165756986
    rs117826255 LS-SNP   dbSNP   A 674 V - > I Helix 24% (Intermediate) 6 165756927
    rs148138380 LS-SNP   dbSNP   A 701 I - > M Coil 58% (Exposed) 6 165752812
    rs2224252 LS-SNP   dbSNP   A 706 R - > K 3/10 Helix 32% (Intermediate) 6 165752798
    rs2860112 LS-SNP   dbSNP   A 707 D - > N 3/10 Helix 75% (Exposed) 6 165752796
    rs199519823 LS-SNP   dbSNP   A 755 V - > A Helix 40% (Exposed) 6 165746590
    rs145722515 LS-SNP   dbSNP   A 757 R - > Q Helix 64% (Exposed) 6 165746584