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An Information Portal to 105097 Biological Macromolecular Structures

DNA binding by GATA transcription factor-complex 3
Biology and Chemistry Report
4HC9
  •   Structure Details   Hide

    Structure Keywords

    Keywords Transcription/DNA
    Text zinc finger, GATA transcription factor, DNA bridging, Transcription-DNA complex

    Polymeric Molecules

    Chain A
    Description Trans-acting T-cell-specific transcription factor GATA-3 
    Fragment UNP residues 260 -365 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12893.9 
    Source Method genetically manipulated  
    Entity Name GATA-binding factor 3 
    Chain Y
    Description DNA (5'-D(*TP*TP*CP*CP*TP*AP*AP*AP*TP*CP*AP*GP*AP*GP*AP*TP*AP*AP*CP*C)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 6086.0 
    Source Method synthetic  
    Chain Z
    Description DNA (5'-D(*AP*AP*GP*GP*TP*TP*AP*TP*CP*TP*CP*TP*GP*AP*TP*TP*TP*AP*GP*G)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 6179.1 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A GATA3_HUMAN P23771     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    45582   Positive Regulation of T Cell Differentiation  Any Process That Activates or Increases the Frequency Rate or Extent of T Cell Differentiation. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    976   Transcription Regulatory Region Sequence Specific DNA Binding  Interacting Selectively and Non Covalently with a Specific Sequence of DNA That Is Part of a Regulatory Region That Controls Transcription of That Section of the Dna. the Transcribed Region Might Be Described As a Gene Cistron or Operon. 
    3700   Sequence Specific DNA Binding Transcription Factor Activity  Interacting Selectively and Non Covalently with a Specific DNA Sequence in Order to Modulate Transcription. the Transcription Factor May or May Not Also Interact Selectively with a Protein or Macromolecular Complex. 
    8270   Zinc Ion Binding  Interacting Selectively and Non Covalently with Zinc (zn) Ions. 
    43565   Sequence Specific DNA Binding  Interacting Selectively and Non Covalently with DNA of a Specific Nucleotide Composition E.g. Gc Rich DNA Binding or with a Specific Sequence Motif or Type of DNA E.g. Promotor Binding or Rdna Binding. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene gata3
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    10 10p15 2625     GATA binding protein 3 GATA3    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs104894163 LS-SNP   dbSNP   A 275 W - > R Coil 29% (Intermediate) 10 8106000
    rs104894165 LS-SNP   dbSNP   A 353 R - > S Coil 15% (Intermediate) 10 8115710 ZN