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Crystal structure of the CDYL2-chromodomain
Biology and Chemistry Report
4HAE
  •   Structure Details   Hide

    Structure Keywords

    Keywords PROTEIN BINDING
    Text chromodomain, PROTEIN BINDING, Structural Genomics Consortium, SGC

    Polymeric Molecules

    Chain A
    Description Chromodomain Y-like protein 2 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 9839.0 
    Source Method genetically manipulated  
    Entity Name CDY-like 2 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    SO4  SULFATE ION  O4 S   96.06  View 
    UNX  UNKNOWN ATOM OR ION  X   0.00  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A CDYL2_HUMAN Q7Z5I8     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene cdyl2
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3) V2r Prare2
    Host Vector Type Plasmid
    Host Plasmid Name pET28-MHL


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    16 16q23.2 124359     chromodomain protein, Y-like 2 CDYL2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs201935636 LS-SNP   dbSNP   A 42 E - > D 3/10 Helix 44% (Exposed) 16 80718925
    rs148308758 LS-SNP   dbSNP   A 57 G - > EV Bend 101% (Exposed) 16 80718881