POP-OUT | CLOSE

An Information Portal to 106082 Biological Macromolecular Structures

Crystal Structure of the Mevalonate Kinase from an Archaeon Methanosarcina mazei
Biology and Chemistry Report
4HAC
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text GHMP, ATP binding, Phosphorylation, TRANSFERASE

    Polymeric Molecules

    Chain A
    Description Mevalonate kinase 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 33801.3 
    Source Method genetically manipulated  
    Chain B
    Description Mevalonate kinase 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 33848.2 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    MG  MAGNESIUM ION  Mg   24.31  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A Q8PW39_METMA Q8PW39     
    B Q8PW39_METMA Q8PW39     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.1.36      
    2.7.1.36      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6629   Lipid Metabolic Process  The Chemical Reactions and Pathways Involving Lipids Compounds Soluble in an Organic Solvent But Not or Sparingly in an Aqueous Solvent. Includes Fatty Acids; Neutral Fats Other Fatty Acid Esters and Soaps; Long Chain (fatty) Alcohols and Waxes; Sphingoids and Other Long Chain Bases; Glycolipids Phospholipids and Sphingolipids; and Carotenes Polyprenols Sterols Terpenes and Other Isoprenoids. 
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    8299   Isoprenoid Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Any Isoprenoid Compound Isoprene (2 Methylbuta 1 3 Diene) or Compounds Containing or Derived From Linked Isoprene (3 Methyl 2 Butenylene) Residues. 
    16310   Phosphorylation  The Process of Introducing a Phosphate Group Into a Molecule Usually with the Formation of a Phosphoric Ester a Phosphoric Anhydride or a Phosphoric Amide. 
    19287   Isopentenyl Diphosphate Biosynthetic Process Mevalonate Pathway  The Chemical Reactions and Pathways Resulting in the Formation of Isopentenyl Diphosphate Via the Intermediate Mevalonate. This Pathway Converts Acetate in the Form of Acetyl Coa to Isopentenyl Diphosphate (ipp) the Fundamental Unit in Isoprenoid Biosynthesis Through a Series of Mevalonate Intermediates. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    287   Magnesium Ion Binding  Interacting Selectively and Non Covalently with Magnesium (mg) Ions. 
    4496   Mevalonate Kinase Activity  Catalysis of the Reaction: (r) Mevalonate + ATP = (r) 5 Phosphomevalonate + Adp + 2 H(+). 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16301   Kinase Activity  Catalysis of the Transfer of a Phosphate Group Usually From ATP to a Substrate Molecule. 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 
    16773   Phosphotransferase Activity Alcohol Group As Acceptor  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to an Alcohol Group (acceptor). 
    Chain B
    GO ID   Ontology GO Term Definition
    6629   Lipid Metabolic Process  The Chemical Reactions and Pathways Involving Lipids Compounds Soluble in an Organic Solvent But Not or Sparingly in an Aqueous Solvent. Includes Fatty Acids; Neutral Fats Other Fatty Acid Esters and Soaps; Long Chain (fatty) Alcohols and Waxes; Sphingoids and Other Long Chain Bases; Glycolipids Phospholipids and Sphingolipids; and Carotenes Polyprenols Sterols Terpenes and Other Isoprenoids. 
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    8299   Isoprenoid Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Any Isoprenoid Compound Isoprene (2 Methylbuta 1 3 Diene) or Compounds Containing or Derived From Linked Isoprene (3 Methyl 2 Butenylene) Residues. 
    16310   Phosphorylation  The Process of Introducing a Phosphate Group Into a Molecule Usually with the Formation of a Phosphoric Ester a Phosphoric Anhydride or a Phosphoric Amide. 
    19287   Isopentenyl Diphosphate Biosynthetic Process Mevalonate Pathway  The Chemical Reactions and Pathways Resulting in the Formation of Isopentenyl Diphosphate Via the Intermediate Mevalonate. This Pathway Converts Acetate in the Form of Acetyl Coa to Isopentenyl Diphosphate (ipp) the Fundamental Unit in Isoprenoid Biosynthesis Through a Series of Mevalonate Intermediates. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    287   Magnesium Ion Binding  Interacting Selectively and Non Covalently with Magnesium (mg) Ions. 
    4496   Mevalonate Kinase Activity  Catalysis of the Reaction: (r) Mevalonate + ATP = (r) 5 Phosphomevalonate + Adp + 2 H(+). 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16301   Kinase Activity  Catalysis of the Transfer of a Phosphate Group Usually From ATP to a Substrate Molecule. 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 
    16773   Phosphotransferase Activity Alcohol Group As Acceptor  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to an Alcohol Group (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Scientific Name Methanosarcina mazei  
    Strain ATCC BAA-159 / DSM 3647 / GOE1 / GO1 / JCM 11833 / OCM 88
    Gene mm_1762, mvk
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET28a


    Chain A
    Scientific Name Methanosarcina mazei  
    Strain ATCC BAA-159 / DSM 3647 / GOE1 / GO1 / JCM 11833 / OCM 88
    Gene mm_1762, mvk
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET28a