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Crystal structure of a putative Cytosolic malate dehydrogenase from Leishmania major Friedlin
Biology and Chemistry Report
4H7P
  •   Structure Details   Hide

    Structure Keywords

    Keywords OXIDOREDUCTASE
    Text SSGCID, Leishmania major, Malate dehydrogenase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, OXIDOREDUCTASE

    Polymeric Molecules

    Chain A,B
    Description Malate dehydrogenase 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 36483.0 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B Q4Q7X6_LEIMA Q4Q7X6     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  1.1.1.37      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    5975   Carbohydrate Metabolic Process  The Chemical Reactions and Pathways Involving Carbohydrates Any of a Group of Organic Compounds Based of the General Formula Cx(h2o)y. Includes the Formation of Carbohydrate Derivatives by the Addition of a Carbohydrate Residue to Another Molecule. 
    6099   Tricarboxylic Acid Cycle  A Nearly Universal Metabolic Pathway in Which the Acetyl Group of Acetyl Coenzyme a Is Effectively Oxidized to Two Co2 and Four Pairs of Electrons Are Transferred to Coenzymes. the Acetyl Group Combines with Oxaloacetate to Form Citrate Which Undergoes Successive Transformations to Isocitrate 2 Oxoglutarate Succinyl Coa Succinate Fumarate Malate and Oxaloacetate Again Thus Completing the Cycle. in Eukaryotes the Tricarboxylic Acid Is Confined to the Mitochondria. See Also Glyoxylate Cycle. 
    6108   Malate Metabolic Process  The Chemical Reactions and Pathways Involving Malate the Anion of Hydroxybutanedioic Acid a Chiral Hydroxydicarboxylic Acid. the (+) Enantiomer Is an Important Intermediate in Metabolism As a Component of Both the Tca Cycle and the Glyoxylate Cycle. 
    44262   Cellular Carbohydrate Metabolic Process  The Chemical Reactions and Pathways Involving Carbohydrates Any of a Group of Organic Compounds Based of the General Formula Cx(h2o)y As Carried Out by Individual Cells. 
    55114   Oxidation Reduction Process  A Metabolic Process That Results in the Removal or Addition of One or More Electrons to or From a Substance with or Without the Concomitant Removal or Addition of a Proton or Protons. 
    5829   Cytosol  The Part of the Cytoplasm That Does Not Contain Organelles But Which Does Contain Other Particulate Matter Such As Protein Complexes. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    16491   Oxidoreductase Activity  Catalysis of an Oxidation Reduction (redox) Reaction a Reversible Chemical Reaction in Which the Oxidation State of an Atom or Atoms Within a Molecule Is Altered. One Substrate Acts As a Hydrogen or Electron Donor and Becomes Oxidized While the Other Acts As Hydrogen or Electron Acceptor and Becomes Reduced. 
    16615   Malate Dehydrogenase Activity  Catalysis of the Reversible Conversion of Pyruvate or Oxaloacetate to Malate. 
    16616   Oxidoreductase Activity Acting On the Ch Oh Group of Donors NAD or Nadp As Acceptor  Catalysis of an Oxidation Reduction (redox) Reaction in Which a Ch Oh Group Acts As a Hydrogen or Electron Donor and Reduces Nad+ or Nadp. 
    30060   L Malate Dehydrogenase Activity  Catalysis of the Reaction: (s) Malate + Nad+ = Oxaloacetate + Nadh + H+. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Leishmania major  
    Strain FRIEDLIN
    Gene cmdh, lmjf_28_2860
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name AVA0421