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An Information Portal to 105025 Biological Macromolecular Structures

human Plk1-PBD with a glycerol bound at the phophopeptide binding site
Biology and Chemistry Report
4H5X
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text Kinase, TRANSFERASE

    Polymeric Molecules

    Chain A,B
    Description Serine/threonine-protein kinase PLK1 
    Fragment UNP residues 367-603 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 27544.5 
    Source Method genetically manipulated  
    Entity Name Polo-like kinase 1, PLK-1, Serine/threonine-protein kinase 13, STPK13 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B PLK1_HUMAN P53350     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  2.7.11.21      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene plk1, plk
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET21


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    16 16p12.2 5347     polo-like kinase 1 PLK1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs137928994 LS-SNP   dbSNP   B 383 S - > G Helix 29% (Intermediate) 16 23698900
    rs200843318 LS-SNP   dbSNP   B 390 S - > L 3/10 Helix 31% (Intermediate) 16 23698922
    rs201491344 LS-SNP   dbSNP   B 404 A - > S 3/10 Helix 62% (Exposed) 16 23700006
    rs35347525 LS-SNP   dbSNP   B 441 R - > H Beta Ladder 12% (Intermediate) 16 23700610
    rs189573198 LS-SNP   dbSNP   B 456 R - > S Turn 22% (Intermediate) 16 23700654
    rs199640055 LS-SNP   dbSNP   B 456 R - > H Turn 22% (Intermediate) 16 23700655
    rs45569335 LS-SNP   dbSNP   B 463 L - > H Beta Ladder 27% (Intermediate) 16 23700676
    rs184851025 LS-SNP   dbSNP   B 476 I - > M Helix 2% (Buried) 16 23700817
    rs150875727 LS-SNP   dbSNP   B 498 T - > M Coil 27% (Intermediate) 16 23700882
    rs138397393 LS-SNP   dbSNP   B 499 P - > L Coil 34% (Intermediate) 16 23700885
    rs149623133 LS-SNP   dbSNP   B 512 R - > Q Beta Ladder 27% (Intermediate) 16 23700924
    rs56027600 LS-SNP   dbSNP   B 518 R - > H Bend 40% (Exposed) 16 23700942
    rs140033760 LS-SNP   dbSNP   B 530 V - > M Beta Ladder 0% (Buried) 16 23700977
    rs143546758 LS-SNP   dbSNP   B 560 R - > H Beta Ladder 21% (Intermediate) 16 23701251
    rs34359215 LS-SNP   dbSNP   B 581 R - > C Helix 53% (Exposed) 16 23701313
    rs148952170 LS-SNP   dbSNP   B 588 D - > E Helix 37% (Exposed) 16 23701336