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Crystal Structure of HIV-1 Reverse Transcriptase (RT) in Complex with (E)-3-(3-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)- 4-fluorophenoxy)-5-fluorophenyl)acrylonitrile (JLJ506), A Non-nucleoside inhibitor
Biology and Chemistry Report
4H4O
  •   Structure Details   Hide

    Structure Keywords

    Keywords Hydrolase/Hydrolase inhibitor
    Text Polymerase, Transferase, Hydrolase/inhibitor, Rnase, Hydrolase-Hydrolase inhibitor complex

    Polymeric Molecules

    Chain A
    Description Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT 
    Fragment HIV-1 Reverse Transcriptase, p66 Subunit 
    Mutation C280S, K172A, K173A 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 63990.0 
    Source Method genetically manipulated  
    Entity Name Gag-Pol polyprotein 
    Chain B
    Description Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT 
    Fragment HIV-1 Reverse Transcriptase, p51 Subunit 
    Mutation C280S 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 50040.1 
    Source Method genetically manipulated  
    Entity Name Gag-Pol polyprotein 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    506  (2E)-3-(3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-5-fluorophenyl)prop-2-enenitrile  C21 H15 F2 N3 O4   411.36  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A POL_HV1B1 P03366     
    B POL_HV1B1 P03366     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.7.49      
    2.7.7.7      
    3.1.26.13      
    2.7.7.49      
    2.7.7.7      
    3.1.26.13      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6278   RNA Dependent DNA Replication  A DNA Replication Process That Uses RNA As a Template For RNA Dependent DNA Polymerases (e.g. Reverse Transcriptase) That Synthesize the New Strands. 
    3676   Nucleic Acid Binding  Interacting Selectively and Non Covalently with Any Nucleic Acid. 
    3964   RNA Directed DNA Polymerase Activity  Catalysis of the Reaction: Deoxynucleoside Triphosphate + Dna(n) = Diphosphate + Dna(n+1). Catalyzes RNA Template Directed Extension of the 3' End of a DNA Strand by One Deoxynucleotide At a Time. 
    4523   RNA DNA Hybrid Ribonuclease Activity  Catalysis of the Endonucleolytic Cleavage of RNA in RNA DNA Hybrids to 5' Phosphomonoesters. 
    Chain B
    GO ID   Ontology GO Term Definition
    6278   RNA Dependent DNA Replication  A DNA Replication Process That Uses RNA As a Template For RNA Dependent DNA Polymerases (e.g. Reverse Transcriptase) That Synthesize the New Strands. 
    3964   RNA Directed DNA Polymerase Activity  Catalysis of the Reaction: Deoxynucleoside Triphosphate + Dna(n) = Diphosphate + Dna(n+1). Catalyzes RNA Template Directed Extension of the 3' End of a DNA Strand by One Deoxynucleotide At a Time. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Hiv 1
    Scientific Name Human immunodeficiency virus type 1  
    Strain BH10 ISOLATE
    Details Genus Name: Lentivirus
    Gene p51 rt
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pCDF-2


    Chain A
    Common Name Hiv 1
    Scientific Name Human immunodeficiency virus type 1 bh10  
    Strain BH10 ISOLATE
    Details Genus Name: Lentivirus
    Gene p66 rt
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pCDF-2