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Crystal structure of an enolase (mandalate racemase subgroup, target EFI-502101) from Pelagibaca bermudensis htcc2601, with bound mg and l-4-hydroxyproline betaine (betonicine)
Biology and Chemistry Report
4H2H
  •   Structure Details   Hide

    Structure Keywords

    Keywords ISOMERASE
    Text Enolase, mandelate racemase subgroup, enzyme function initiative, EFI, Structural Genomics, ISOMERASE

    Polymeric Molecules

    Chain A,B,C,D,E,F,G,H
    Description Mandelate racemase/muconate lactonizing enzyme 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 40701.5 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    0XW  (2S,4R)-4-hydroxy-1,1-dimethylpyrrolidinium-2-carboxylate  C7 H13 N O3   159.18  View 
    IOD  IODIDE ION  I   126.90  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
    MPD  (4S)-2-METHYL-2,4-PENTANEDIOL  C6 H14 O2   118.17  View 
    NI  NICKEL (II) ION  Ni   58.69  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D,E,F,G,H HPBD_PELBH Q0FPQ4     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B C D E F G H  5.1.1      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D,E,F,G,H
    GO ID   Ontology GO Term Definition
    6579   Amino Acid Betaine Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of Any Betaine the N Trimethyl Derivative of an Amino Acid. 
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    287   Magnesium Ion Binding  Interacting Selectively and Non Covalently with Magnesium (mg) Ions. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    16853   Isomerase Activity  Catalysis of the Geometric or Structural Changes Within One Molecule. Isomerase Is the Systematic Name For Any Enzyme of EC Class 5. 
    36361   Racemase Activity Acting On Amino Acids and Derivatives  Catalysis of the Interconversion of the Two Enantiomers of a Chiral Amino Acid or Amino Acid Derivative. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D,E,F,G,H
    Scientific Name Pelagibaca bermudensis  
    Strain HTCC2601
    Gene r2601_01638
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET