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Structure of human thymidylate synthase at high salt conditions
Biology and Chemistry Report
4GYH
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text Methyl transferase, TRANSFERASE

    Polymeric Molecules

    Chain A
    Description Thymidylate synthase 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 36454.0 
    Source Method genetically manipulated  
    Entity Name TS, TSase 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A TYSY_HUMAN P04818     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.1.1.45      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    9165   Nucleotide Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Nucleotides Any Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Glycose Moiety; May Be Mono Di or Triphosphate; This Definition Includes Cyclic Nucleotides (nucleoside Cyclic Phosphates). 
    32259   Methylation  The Process in Which a Methyl Group Is Covalently Attached to a Molecule. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5739   Mitochondrion  A Semiautonomous Self Replicating Organelle That Occurs in Varying Numbers Shapes and Sizes in the Cytoplasm of Virtually All Eukaryotic Cells. It Is Notably the Site of Tissue Respiration. 
    5743   Mitochondrial Inner Membrane  The Inner I.e. Lumen Facing Lipid Bilayer of the Mitochondrial Envelope. It Is Highly Folded to Form Cristae. 
    5759   Mitochondrial Matrix  The Gel Like Material with Considerable Fine Structure That Lies in the Matrix Space or Lumen of a Mitochondrion. It Contains the Enzymes of the Tricarboxylic Acid Cycle and in Some Organisms the Enzymes Concerned with Fatty Acid Oxidation. 
    16020   Membrane  Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    8168   Methyltransferase Activity  Catalysis of the Transfer of a Methyl Group to an Acceptor Molecule. 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene tyms, ts, ok/sw-cl.29
    Host Scientific Name Escherichia coli  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    18 18p11.32 7298     thymidylate synthetase TYMS    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs139713318 LS-SNP   dbSNP   A 78 R - > C Coil 50% (Exposed) 18 659667
    rs59755869 LS-SNP   dbSNP   A 100 E - > Q Helix 30% (Intermediate) 18 662164
    rs201415512 LS-SNP   dbSNP   A 134 V - > D Coil 16% (Intermediate) 18 662267
    rs200442141 LS-SNP   dbSNP   A 147 R - > K Coil 59% (Exposed) 18 662306
    rs141666868 LS-SNP   dbSNP   A 148 D - > E Coil 43% (Exposed) 18 662310
    rs596909 LS-SNP   dbSNP   A 157 G - > V Bend 50% (Exposed) 18 669087
    rs11540153 LS-SNP   dbSNP   A 167 T - > I Helix 20% (Intermediate) 18 669117
    rs147052596 LS-SNP   dbSNP   A 170 T - > S Helix 77% (Exposed) 18 669126
    rs201232749 LS-SNP   dbSNP   A 216 S - > L Beta Ladder 33% (Intermediate) 18 670782