POP-OUT | CLOSE
 
Crystal structure of human B type phosphoglycerate mutase H11 phosphorylated form
Biology and Chemistry Report
4GPZ
  •   Structure Details   Hide

    Structure Keywords

    Keywords ISOMERASE, HYDROLASE
    Text ALPHA/BETA, ISOMERASE, HYDROLASE

    Polymeric Molecules

    Chain A,B
    Description Phosphoglycerate mutase 1 
    Fragment Human type B phosphoglycerate mutase 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 29996.3 
    Source Method genetically manipulated  
    Entity Name BPG-dependent PGAM 1, Phosphoglycerate mutase isozyme B, PGAM-B 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CL  CHLORIDE ION  Cl   35.45  View 
    MES  2-(N-MORPHOLINO)-ETHANESULFONIC ACID  C6 H13 N O4 S   195.24  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B PGAM1_HUMAN P18669     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  3.1.3.13      
    A B  5.4.2.11      
    A B  5.4.2.4      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    5975   Carbohydrate Metabolic Process  The Chemical Reactions and Pathways Involving Carbohydrates Any of a Group of Organic Compounds Based of the General Formula Cx(h2o)y. Includes the Formation of Carbohydrate Derivatives by the Addition of a Carbohydrate Residue to Another Molecule. 
    6006   Glucose Metabolic Process  The Chemical Reactions and Pathways Involving Glucose the Aldohexose Gluco Hexose. D Glucose Is Dextrorotatory and Is Sometimes Known As Dextrose; It Is an Important Source of Energy For Living Organisms and Is Found Free As Well As Combined in Homo and Hetero Oligosaccharides and Polysaccharides. 
    6094   Gluconeogenesis  The Formation of Glucose From Noncarbohydrate Precursors Such As Pyruvate Amino Acids and Glycerol. 
    6096   Glycolytic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of a Carbohydrate Into Pyruvate with the Concomitant Production of a Small Amount of Atp. Glycolysis Begins with the Metabolism of a Carbohydrate to Generate Products That Can Enter the Pathway and Ends with the Production of Pyruvate. Pyruvate May Be Converted to Ethanol Lactate or Other Small Molecules or Fed Into the Tca Cycle. 
    6110   Regulation of Glycolytic Process  Any Process That Modulates the Frequency Rate or Extent of Glycolysis. 
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    16311   Dephosphorylation  The Process of Removing One or More Phosphoric (ester or Anhydride) Residues From a Molecule. 
    43456   Regulation of Pentose Phosphate Shunt  Any Process That Modulates the Frequency Rate or Extent of the Pentose Phosphate Shunt the Process in Which Glucose Is Oxidized Coupled to Nadph Synthesis. 
    44281   Small Molecule Metabolic Process  The Chemical Reactions and Pathways Involving Small Molecules Any Low Molecular Weight Monomeric Non Encoded Molecule. 
    45730   Respiratory Burst  A Phase of Elevated Metabolic Activity During Which Oxygen Consumption Increases; This Leads to the Production by an Nadh Dependent System of Hydrogen Peroxide (h2o2) Superoxide Anions and Hydroxyl Radicals. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5829   Cytosol  The Part of the Cytoplasm That Does Not Contain Organelles But Which Does Contain Other Particulate Matter Such As Protein Complexes. 
    16020   Membrane  Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    70062   Extracellular Vesicular Exosome  A Membrane Bounded Vesicle That Is Released Into the Extracellular Region by Fusion of the Limiting Endosomal Membrane of a Multivesicular Body with the Plasma Membrane. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    4082   Bisphosphoglycerate Mutase Activity  Catalysis of the Reaction: 3 Phospho D Glyceroyl Phosphate = 2 3 Bisphospho D Glycerate. 
    4083   Bisphosphoglycerate 2 Phosphatase Activity  Catalysis of the Reaction: 2 3 Bisphospho D Glycerate + H(2)o = 3 Phospho D Glycerate + Phosphate. 
    4619   Phosphoglycerate Mutase Activity  Catalysis of the Reaction: 2 Phospho D Glycerate = 3 Phospho D Glycerate. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 
    16853   Isomerase Activity  Catalysis of the Geometric or Structural Changes Within One Molecule. Isomerase Is the Systematic Name For Any Enzyme of EC Class 5. 
    16868   Intramolecular Transferase Activity Phosphotransferases  Catalysis of the Transfer of a Phosphate Group From One Position to Another Within a Single Molecule. 
    19901   Protein Kinase Binding  Interacting Selectively and Non Covalently with a Protein Kinase Any Enzyme That Catalyzes the Transfer of a Phosphate Group Usually From ATP to a Protein Substrate. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene pgam1, pgama, cdabp0006
    Host Scientific Name Escherichia coli  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    10 10q25.3 5223     phosphoglycerate mutase 1 (brain) PGAM1