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Crystal Structure of Ca2+/CaM:Kv7.4 (KCNQ4) B helix complex
Biology and Chemistry Report
4GOW
  •   Structure Details   Hide

    Structure Keywords

    Keywords PROTEIN BINDING
    Text protein complex, PROTEIN BINDING, ion channel, calmodulin, potassium channel

    Polymeric Molecules

    Chain D
    Description Calmodulin 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16335.0 
    Source Method genetically manipulated  
    Entity Name CaM 
    Chain A
    Description Potassium voltage-gated channel subfamily KQT member 4 
    Fragment UNP residues 522-593 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 8211.8 
    Source Method genetically manipulated  
    Entity Name KQT-like 4, Potassium channel subunit alpha KvLQT4, Voltage-gated potassium channel subunit Kv7.4 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CA  CALCIUM ION  Ca   40.08  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A KCNQ4_HUMAN O96025     
    D CALM_HUMAN P02593     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6813   Potassium Ion Transport  The Directed Movement of Potassium Ions (k+) Into Out of or Within a Cell or Between Cells by Means of Some Agent Such As a Transporter or Pore. 
    8076   Voltage Gated Potassium Channel Complex  A Protein Complex That Forms a Transmembrane Channel Through Which Potassium Ions May Cross a Cell Membrane in Response to Changes in Membrane Potential. 
    5249   Voltage Gated Potassium Channel Activity  Catalysis of the Transmembrane Transfer of a Potassium Ion by a Voltage Gated Channel. a Voltage Gated Channel Is a Channel Whose Open State Is Dependent On the Voltage Across the Membrane in Which It Is Embedded. 
    Chain D
    GO ID   Ontology GO Term Definition
    1975   Response to Amphetamine  Any Process That Results in a Change in State or Activity of a Cell or an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of an Amphetamine Stimulus. Amphetamines Consist of a Group of Compounds Related to Alpha Methylphenethylamine. 
    2027   Regulation of Heart Rate  Any Process That Modulates the Frequency or Rate of Heart Contraction. 
    2576   Platelet Degranulation  The Regulated Exocytosis of Secretory Granules Containing Preformed Mediators Such As Histamine and Serotonin by a Platelet. 
    5513   Detection of Calcium Ion  The Series of Events in Which a Calcium Ion Stimulus Is Received by a Cell and Converted Into a Molecular Signal. 
    5975   Carbohydrate Metabolic Process  The Chemical Reactions and Pathways Involving Carbohydrates Any of a Group of Organic Compounds Based of the General Formula Cx(h2o)y. Includes the Formation of Carbohydrate Derivatives by the Addition of a Carbohydrate Residue to Another Molecule. 
    5980   Glycogen Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of Glycogen a Polydisperse Highly Branched Glucan Composed of Chains of D Glucose Residues. 
    6006   Glucose Metabolic Process  The Chemical Reactions and Pathways Involving Glucose the Aldohexose Gluco Hexose. D Glucose Is Dextrorotatory and Is Sometimes Known As Dextrose; It Is an Important Source of Energy For Living Organisms and Is Found Free As Well As Combined in Homo and Hetero Oligosaccharides and Polysaccharides. 
    6936   Muscle Contraction  A Process in Which Force Is Generated Within Muscle Tissue Resulting in a Change in Muscle Geometry. Force Generation Involves a Chemo Mechanical Energy Conversion Step That Is Carried Out by the Actin/myosin Complex Activity Which Generates Force Through ATP Hydrolysis. 
    7165   Signal Transduction  The Cellular Process in Which a Signal Is Conveyed to Trigger a Change in the Activity or State of a Cell. Signal Transduction Begins with Reception of a Signal (e.g. a Ligand Binding to a Receptor or Receptor Activation by a Stimulus Such As Light) or For Signal Transduction in the Absence of Ligand Signal Withdrawal or the Activity of a Constitutively Active Receptor. Signal Transduction Ends with Regulation of a Downstream Cellular Process E.g. Regulation of Transcription or Regulation of a Metabolic Process. Signal Transduction Covers Signaling From Receptors Located On the Surface of the Cell and Signaling Via Molecules Located Within the Cell. For Signaling Between Cells Signal Transduction Is Restricted to Events At and Within the Receiving Cell. 
    7173   Epidermal Growth Factor Receptor Signaling Pathway  A Series of Molecular Signals Initiated by Binding of a Ligand to the Tyrosine Kinase Receptor Egfr (erbb1) On the Surface of a Cell. the Pathway Ends with Regulation of a Downstream Cellular Process E.g. Transcription. 
    7186   G Protein Coupled Receptor Signaling Pathway  A Series of Molecular Signals That Proceeds with an Activated Receptor Promoting the Exchange of GDP For GTP On the Alpha Subunit of an Associated Heterotrimeric G Protein Complex. the GTP Bound Activated Alpha G Protein Then Dissociates From the Beta and Gamma Subunits to Further Transmit the Signal Within the Cell. the Pathway Begins with Receptor Ligand Interaction or For Basal Gpcr Signaling the Pathway Begins with the Receptor Activating Its G Protein in the Absence of an Agonist and Ends with Regulation of a Downstream Cellular Process E.g. Transcription. 
    7190   Activation of Adenylate Cyclase Activity  Any Process That Initiates the Activity of the Inactive Enzyme Adenylate Cyclase. 
    7202   Activation of Phospholipase C Activity  The Initiation of the Activity of the Inactive Enzyme Phospolipase C As the Result of a Series of Molecular Signals Generated As a Consequence of a G Protein Coupled Receptor Binding to Its Physiological Ligand. 
    7268   Synaptic Transmission  The Process of Communication From a Neuron to a Target (neuron Muscle or Secretory Cell) Across a Synapse. 
    7596   Blood Coagulation  The Sequential Process in Which the Multiple Coagulation Factors of the Blood Interact Ultimately Resulting in the Formation of an Insoluble Fibrin Clot; It May Be Divided Into Three Stages: Stage 1 the Formation of Intrinsic and Extrinsic Prothrombin Converting Principle; Stage 2 the Formation of Thrombin; Stage 3 the Formation of Stable Fibrin Polymers. 
    7603   Phototransduction Visible Light  The Sequence of Reactions Within a Cell Required to Convert Absorbed Photons From Visible Light Into a Molecular Signal. a Visible Light Stimulus Is Electromagnetic Radiation That Can Be Perceived Visually by an Organism; For Organisms Lacking a Visual System This Can Be Defined As Light with a Wavelength Within the Range 380 to 780 Nm. 
    8543   Fibroblast Growth Factor Receptor Signaling Pathway  The Series of Molecular Signals Generated As a Consequence of a Fibroblast Growth Factor Receptor Binding to One of Its Physiological Ligands. 
    10800   Positive Regulation of Peptidyl Threonine Phosphorylation  Any Process That Increases the Frequency Rate or Extent of Peptidyl Threonine Phosphorylation. Peptidyl Threonine Phosphorylation Is the Phosphorylation of Peptidyl Threonine to Form Peptidyl O Phospho L Threonine. 
    10801   Negative Regulation of Peptidyl Threonine Phosphorylation  Any Process That Decreases the Frequency Rate or Extent of Peptidyl Threonine Phosphorylation. Peptidyl Threonine Phosphorylation Is the Phosphorylation of Peptidyl Threonine to Form Peptidyl O Phospho L Threonine. 
    10880   Regulation of Release of Sequestered Calcium Ion Into Cytosol by Sarcoplasmic Reticulum  Any Process That Modulates the Rate Frequency or Extent of Release of Sequestered Calcium Ion Into Cytosol by the Sarcoplasmic Reticulum the Process in Which the Release of Sequestered Calcium Ion by Sarcoplasmic Reticulum Into Cytosol Occurs Via Calcium Release Channels. 
    10881   Regulation of Cardiac Muscle Contraction by Regulation of the Release of Sequestered Calcium Ion  Any Process That Modulates the Frequency Rate or Extent of Cardiac Muscle Contraction Via the Regulation of the Release of Sequestered Calcium Ion by Sarcoplasmic Reticulum Into Cytosol. the Sarcoplasmic Reticulum Is the Endoplasmic Reticulum of Striated Muscle Specialised For the Sequestration of Calcium Ions That Are Released Upon Receipt of a Signal Relayed by the T Tubules From the Neuromuscular Junction. 
    16056   Rhodopsin Mediated Signaling Pathway  The Series of Molecular Signals Generated As a Consequence of Excitation of Rhodopsin by a Photon and the Events That Convert the Absorbed Photons Into a Cellular Response. 
    19722   Calcium Mediated Signaling  Any Intracellular Signal Transduction in Which the Signal Is Passed On Within the Cell Via Calcium Ions. 
    21762   Substantia Nigra Development  The Progression of the Substantia Nigra Over Time From Its Initial Formation Until Its Mature State. the Substantia Nigra Is the Layer of Gray Substance That Separates the Posterior Parts of the Cerebral Peduncles (tegmentum Mesencephali) From the Anterior Parts; It Normally Includes a Posterior Compact Part with Many Pigmented Cells (pars Compacta) and an Anterior Reticular Part Whose Cells Contain Little Pigment (pars Reticularis). 
    22400   Regulation of Rhodopsin Mediated Signaling Pathway  Any Process That Modulates the Frequency Rate or Extent of Rhodopsin Mediated Signaling. 
    30168   Platelet Activation  A Series of Progressive Overlapping Events Triggered by Exposure of the Platelets to Subendothelial Tissue. These Events Include Shape Change Adhesiveness Aggregation and Release Reactions. When Carried Through to Completion These Events Lead to the Formation of a Stable Hemostatic Plug. 
    30801   Positive Regulation of Cyclic Nucleotide Metabolic Process  Any Process That Activates or Increases the Frequency Rate or Extent of the Chemical Reactions and Pathways Involving Cyclic Nucleotides. 
    31954   Positive Regulation of Protein Autophosphorylation  Any Process That Activates or Increases the Frequency Rate or Extent of the Phosphorylation by a Protein of One or More of Its Own Residues. 
    32465   Regulation of Cytokinesis  Any Process That Modulates the Frequency Rate or Extent of the Division of the Cytoplasm of a Cell and Its Separation Into Two Daughter Cells. 
    32516   Positive Regulation of Phosphoprotein Phosphatase Activity  Any Process That Activates or Increases the Activity of a Phosphoprotein Phosphatase. 
    35307   Positive Regulation of Protein Dephosphorylation  Any Process That Activates or Increases the Frequency Rate or Extent of Removal of Phosphate Groups From a Protein. 
    38095   Fc Epsilon Receptor Signaling Pathway  A Series of Molecular Signals Initiated by the Binding of the Fc Portion of Immunoglobulin E (ige) to an Fc Epsilon Receptor On the Surface of a Signal Receiving Cell and Ending with Regulation of a Downstream Cellular Process E.g. Transcription. the Fc Portion of an Immunoglobulin Is Its C Terminal Constant Region. 
    43647   Inositol Phosphate Metabolic Process  The Chemical Reactions and Pathways Involving Inositol Phosphate 1 2 3 4 5 6 Cyclohexanehexol with One or More Phosphate Groups Attached. 
    44281   Small Molecule Metabolic Process  The Chemical Reactions and Pathways Involving Small Molecules Any Low Molecular Weight Monomeric Non Encoded Molecule. 
    45087   Innate Immune Response  Innate Immune Responses Are Defense Responses Mediated by Germline Encoded Components That Directly Recognize Components of Potential Pathogens. 
    46209   Nitric Oxide Metabolic Process  The Chemical Reactions and Pathways Involving Nitric Oxide Nitrogen Monoxide (no) a Colorless Gas Only Slightly Soluble in Water. 
    48011   Neurotrophin Trk Receptor Signaling Pathway  A Series of Molecular Signals Initiated by the Binding of a Neurotrophin to a Receptor On the Surface of the Target Cell Where the Receptor Possesses Tyrosine Kinase Activity and Ending with Regulation of a Downstream Cellular Process E.g. Transcription. 
    50999   Regulation of Nitric Oxide Synthase Activity  Any Process That Modulates the Activity of the Enzyme Nitric Oxide Synthase. 
    51000   Positive Regulation of Nitric Oxide Synthase Activity  Any Process That Activates or Increases the Activity of the Enzyme Nitric Oxide Synthase. 
    51343   Positive Regulation of Cyclic Nucleotide Phosphodiesterase Activity  Any Process That Activates or Increases the Frequency Rate or Extent of Cyclic Nucleotide Phosphodiesterase Activity the Catalysis of the Reaction: Nucleotide 3' 5' Cyclic Phosphate + H2o = Nucleotide 5' Phosphate. 
    51412   Response to Corticosterone  Any Process That Results in a Change in State or Activity of a Cell or an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Corticosterone Stimulus. Corticosterone Is a 21 Carbon Steroid Hormone of the Corticosteroid Type Produced in the Cortex of the Adrenal Glands. in Many Species Corticosterone Is the Principal Glucocorticoid Involved in Regulation of Fuel Metabolism Immune Reactions and Stress Responses. 
    51592   Response to Calcium Ion  Any Process That Results in a Change in State or Activity of a Cell or an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Calcium Ion Stimulus. 
    55117   Regulation of Cardiac Muscle Contraction  Any Process That Modulates the Frequency Rate or Extent of Cardiac Muscle Contraction. 
    60314   Regulation of Ryanodine Sensitive Calcium Release Channel Activity  Any Process That Modulates the Activity of a Ryanodine Sensitive Calcium Release Channel. the Ryanodine Sensitive Calcium Release Channel Catalyzes the Transmembrane Transfer of a Calcium Ion by a Channel That Opens When a Ryanodine Class Ligand Has Been Bound by the Channel Complex or One of Its Constituent Parts. 
    60315   Negative Regulation of Ryanodine Sensitive Calcium Release Channel Activity  Any Process That Decreases the Activity of a Ryanodine Sensitive Calcium Release Channel. the Ryanodine Sensitive Calcium Release Channel Catalyzes the Transmembrane Transfer of a Calcium Ion by a Channel That Opens When a Ryanodine Class Ligand Has Been Bound by the Channel Complex or One of Its Constituent Parts. 
    60316   Positive Regulation of Ryanodine Sensitive Calcium Release Channel Activity  Any Process That Increases the Activity of a Ryanodine Sensitive Calcium Release Channel. the Ryanodine Sensitive Calcium Release Channel Catalyzes the Transmembrane Transfer of a Calcium Ion by a Channel That Opens When a Ryanodine Class Ligand Has Been Bound by the Channel Complex or One of Its Constituent Parts. 
    61024   Membrane Organization  A Process Which Results in the Assembly Arrangement of Constituent Parts or Disassembly of a Membrane. a Membrane Is a Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    71902   Positive Regulation of Protein Serine/threonine Kinase Activity  Any Process That Increases the Rate Frequency or Extent of Protein Serine/threonine Kinase Activity. 
    1901841   Regulation of High Voltage Gated Calcium Channel Activity  Any Process That Modulates the Frequency Rate or Extent of High Voltage Gated Calcium Channel Activity. 
    1901844   Regulation of Cell Communication by Electrical Coupling Involved in Cardiac Conduction  Any Process That Modulates the Frequency Rate or Extent of Cell Communication by Electrical Coupling Involved in Cardiac Conduction. 
    922   Spindle Pole  Either of the Ends of a Spindle Where Spindle Microtubules Are Organized; Usually Contains a Microtubule Organizing Center and Accessory Molecules Spindle Microtubules and Astral Microtubules. 
    5576   Extracellular Region  The Space External to the Outermost Structure of a Cell. For Cells Without External Protective or External Encapsulating Structures This Refers to Space Outside of the Plasma Membrane. This Term Covers the Host Cell Environment Outside an Intracellular Parasite. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5654   Nucleoplasm  That Part of the Nuclear Content Other Than the Chromosomes or the Nucleolus. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5813   Centrosome  A Structure Comprised of a Core Structure (in Most Organisms a Pair of Centrioles) and Peripheral Material From Which a Microtubule Based Structure Such As a Spindle Apparatus Is Organized. Centrosomes Occur Close to the Nucleus During Interphase in Many Eukaryotic Cells Though in Animal Cells It Changes Continually During the Cell Division Cycle. 
    5819   Spindle  The Array of Microtubules and Associated Molecules That Forms Between Opposite Poles of a Eukaryotic Cell During Mitosis or Meiosis and Serves to Move the Duplicated Chromosomes Apart. 
    5829   Cytosol  The Part of the Cytoplasm That Does Not Contain Organelles But Which Does Contain Other Particulate Matter Such As Protein Complexes. 
    5856   Cytoskeleton  Any of the Various Filamentous Elements That Form the Internal Framework of Cells and Typically Remain After Treatment of the Cells with Mild Detergent to Remove Membrane Constituents and Soluble Components of the Cytoplasm. the Term Embraces Intermediate Filaments Microfilaments Microtubules the Microtrabecular Lattice and Other Structures Characterized by a Polymeric Filamentous Nature and Long Range Order Within the Cell. the Various Elements of the Cytoskeleton Not Only Serve in the Maintenance of Cellular Shape But Also Have Roles in Other Cellular Functions Including Cellular Movement Cell Division Endocytosis and Movement of Organelles. 
    5876   Spindle Microtubule  Any Microtubule That Is Part of a Mitotic or Meiotic Spindle; Anchored At One Spindle Pole. 
    5886   Plasma Membrane  The Membrane Surrounding a Cell That Separates the Cell From Its External Environment. It Consists of a Phospholipid Bilayer and Associated Proteins. 
    30017   Sarcomere  The Repeating Unit of a Myofibril in a Muscle Cell Composed of an Array of Overlapping Thick and Thin Filaments Between Two Adjacent Z Discs. 
    30426   Growth Cone  The Migrating Motile Tip of a Growing Nerve Cell Axon or Dendrite. 
    31982   Vesicle  Any Small Fluid Filled Spherical Organelle Enclosed by Membrane or Protein. 
    34704   Calcium Channel Complex  An Ion Channel Complex Through Which Calcium Ions Pass. 
    43005   Neuron Projection  A Prolongation or Process Extending From a Nerve Cell E.g. an Axon or Dendrite. 
    70062   Extracellular Vesicular Exosome  A Membrane Bounded Vesicle That Is Released Into the Extracellular Region by Fusion of the Limiting Endosomal Membrane of a Multivesicular Body with the Plasma Membrane. 
    5509   Calcium Ion Binding  Interacting Selectively and Non Covalently with Calcium Ions (ca2+). 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    8179   Adenylate Cyclase Binding  Interacting Selectively and Non Covalently with the Enzyme Adenylate Cyclase. 
    19901   Protein Kinase Binding  Interacting Selectively and Non Covalently with a Protein Kinase Any Enzyme That Catalyzes the Transfer of a Phosphate Group Usually From ATP to a Protein Substrate. 
    19904   Protein Domain Specific Binding  Interacting Selectively and Non Covalently with a Specific Domain of a Protein. 
    30234   Enzyme Regulator Activity  Binds to and Modulates the Activity of an Enzyme. 
    30235   Nitric Oxide Synthase Regulator Activity  Modulates the Activity of Nitric Oxide Synthase. 
    31432   Titin Binding  Interacting Selectively and Non Covalently with Titin Any of a Family of Giant Proteins Found in Striated and Smooth Muscle. in Striated Muscle Single Titin Molecules Span Half the Sarcomere with Their N and C Termini in the Z Disc and M Line Respectively. 
    31800   Type 3 Metabotropic Glutamate Receptor Binding  Interacting Selectively and Non Covalently with a Type 3 Metabotropic Glutamate Receptor. 
    31996   Thioesterase Binding  Interacting Selectively and Non Covalently with Any Thioesterase Enzyme. 
    31997   N Terminal Myristoylation Domain Binding  Interacting Selectively and Non Covalently with the N Terminus of a Protein That Has the Potential to Be or Has Been Modified by N Terminal Myristoylation. Binding Affinity Is Typically Altered by Myristoylation; For Example N Terminal Myristoylation of Hiv Nef Increases Its Affinity For Calmodulin. 
    43274   Phospholipase Binding  Interacting Selectively and Non Covalently with Any Phospholipase Enzymes That Catalyze of the Hydrolysis of a Glycerophospholipid. 
    43539   Protein Serine/threonine Kinase Activator Activity  Increases the Activity of a Protein Serine/threonine Kinase. 
    43548   Phosphatidylinositol 3 Kinase Binding  Interacting Selectively and Non Covalently with a Phosphatidylinositol 3 Kinase Any Enzyme That Catalyzes the Addition of a Phosphate Group to an Inositol Lipid At the 3' Position of the Inositol Ring. 
    44325   Ion Channel Binding  Interacting Selectively and Non Covalently with One or More Specific Sites On an Ion Channel a Protein Complex That Spans a Membrane and Forms a Water Filled Channel Across the Phospholipid Bilayer Allowing Selective Ion Transport Down Its Electrochemical Gradient. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 
    47485   Protein N Terminus Binding  Interacting Selectively and Non Covalently with a Protein N Terminus the End of Any Peptide Chain At Which the 2 Amino (or 2 Imino) Function of a Constituent Amino Acid Is Not Attached in Peptide Linkage to Another Amino Acid Residue. 
    48306   Calcium Dependent Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules) in the Presence of Calcium. 
    50998   Nitric Oxide Synthase Binding  Interacting Selectively and Non Covalently with the Enzyme Nitric Oxide Synthase. 
    72542   Protein Phosphatase Activator Activity  Increases the Activity of a Protein Phosphatase an Enzyme Which Catalyzes of the Removal of a Phosphate Group From a Protein Substrate Molecule. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene kcnq4
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)plyss
    Host Vector Type Plasmid
    Host Plasmid Name pET28


    Chain D
    Common Name Human
    Scientific Name Homo sapiens  
    Gene calm1, calm, cam, cam1, calm2, cam2, camb, calm3, calml2, cam3, camc, camiii
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)plyss
    Host Vector Type Plasmid
    Host Plasmid Name pET28


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1p34 9132     potassium voltage-gated channel, KQT-like subfamily, member 4 KCNQ4    
    2 2p21 805     calmodulin 2 (phosphorylase kinase, delta) CALM2    
    14 14q32.11 801     calmodulin 1 (phosphorylase kinase, delta) CALM1    
    19 19q13.2-q13.3 808     calmodulin 3 (phosphorylase kinase, delta) CALM3    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs139868247 LS-SNP   dbSNP   A 535 R - > C Helix 22% (Intermediate) 1 41298775
    rs142553333 LS-SNP   dbSNP   D 3 Q - > K Coil 117% (Exposed) 19 47109090
    rs11551440 LS-SNP   dbSNP   D 9 I - > V Helix 36% (Intermediate) 2 47397879
    rs11551457 LS-SNP   dbSNP   D 22 D - > G Turn 64% (Exposed) 2 47389768 CA
    rs112786165 LS-SNP   dbSNP   D 23 G - > V Coil 71% (Exposed) 2 47389765
    rs11551456 LS-SNP   dbSNP   D 27 I - > V Beta Ladder 1% (Buried) 2 47389754
    rs11551432 LS-SNP   dbSNP   D 36 M - > I Helix 2% (Buried) 2 47389725
    rs11551458 LS-SNP   dbSNP   D 38 S - > P Helix 5% (Buried) 2 47389721
    rs199950662 LS-SNP   dbSNP   D 39 L - > P Turn 7% (Buried) 14 90867687
    rs199897752 LS-SNP   dbSNP   D 41 Q - > L Coil 30% (Intermediate) 14 90867693
    rs11551442 LS-SNP   dbSNP   D 41 Q - > R Coil 30% (Intermediate) 2 47389711
    rs202194260 LS-SNP   dbSNP   D 49 Q - > R Helix 60% (Exposed) 14 90867717
    rs11551450 LS-SNP   dbSNP   D 49 Q - > P Helix 60% (Exposed) 2 47389687
    rs11551464 LS-SNP   dbSNP   D 69 L - > M Helix 19% (Intermediate) 2 47389502
    rs41389749 LS-SNP   dbSNP   D 72 M - > T Helix 1% (Buried) 2 47389492
    rs11551438 LS-SNP   dbSNP   D 74 R - > G Helix 70% (Exposed) 2 47389487
    rs11541171 LS-SNP   dbSNP   D 90 R - > Q Helix 65% (Exposed) 14 90870299
    rs11551460 LS-SNP   dbSNP   D 100 I - > V Beta 2% (Buried) 2 47388982
    rs147880865 LS-SNP   dbSNP   D 102 A - > T Helix 25% (Intermediate) 19 47112124
    rs11551437 LS-SNP   dbSNP   D 103 A - > V Helix 35% (Intermediate) 2 47388972
    rs17850324 LS-SNP   dbSNP   D 123 E - > Q Helix 41% (Exposed) 2 47388913
    rs200594401 LS-SNP   dbSNP   D 134 G - > V Bend 52% (Exposed) 2 47388879
    rs11551462 LS-SNP   dbSNP   D 141 F - > L Helix 1% (Buried) 2 47387941