POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

Crystal Structure of NSD3 tandem PHD5-C5HCH domains complexed with H3 peptide 1-15
Biology and Chemistry Report
4GNF
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/NUCLEAR PROTEIN
    Text zinc finger, transcription, histone, nuclear protein, TRANSFERASE-NUCLEAR PROTEIN complex

    Polymeric Molecules

    Chain A
    Description Histone-lysine N-methyltransferase NSD3 
    Fragment UNP RESIDUES 1310-1413 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12058.8 
    Source Method genetically manipulated  
    Entity Name Nuclear SET domain-containing protein 3, Protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, Wolf-Hirschhorn syndrome candidate 1-like protein 1, WHSC1-like protein 1 
    Chain C
    Description Histone H3.3 
    Fragment UNP RESIDUES 2-16 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 1565.8 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A NSD3_HUMAN B7ZL11     
    C H33_HUMAN P06351     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.1.1.43      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    8270   Zinc Ion Binding  Interacting Selectively and Non Covalently with Zinc (zn) Ions. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Scientific Name Homo sapiens  
    Gene whsc1l1, nsd3, dc28
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q42.12 3020     H3 histone, family 3A H3F3A    
    8 8p11.2 54904     Wolf-Hirschhorn syndrome candidate 1-like 1 WHSC1L1    
    17 17q25.1 3021     H3 histone, family 3B (H3.3B) H3F3B    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs201199873 LS-SNP   dbSNP   A 1366 Q - > R Beta 58% (Exposed) 8 38133376