POP-OUT | CLOSE
 
complex structure of nectin-4 bound to MV-H
Biology and Chemistry Report
4GJT
  •   Structure Details   Hide

    Structure Keywords

    Keywords MEMBRANE PROTEIN/VIRAL PROTEIN
    Text six-bladed -propeller, IgV-like fold, viral entry, MV-H, nectin-4, beta4/beta5 groove, MEMBRANE PROTEIN-VIRAL PROTEIN complex

    Polymeric Molecules

    Chain A
    Description Hemagglutinin glycoprotein 
    Fragment MV-H fragment, 156-617 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 52517.3 
    Source Method genetically manipulated  
    Chain B,C
    Description Poliovirus receptor-related protein 4 
    Fragment nectin-4 fragment, 32-145 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13566.2 
    Source Method genetically manipulated  
    Entity Name Ig superfamily receptor LNIR, Nectin-4, Processed poliovirus receptor-related protein 4 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A HEMA_MEASC Q786F2     
    B,C PVRL4_HUMAN Q96NY8     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    19058   Viral Life Cycle  A Set of Processes Which All Viruses Follow to Ensure Survival; Includes Attachment and Entry of the Virus Particle Decoding of Genome Information Translation of Viral MRNA by Host Ribosomes Genome Replication and Assembly and Release of Viral Particles Containing the Genome. 
    19031   Viral Envelope  The Lipid Bilayer of a Virion That Surrounds the Protein Capsid. May Also Contain Glycoproteins. 
    4308   Exo Alpha Sialidase Activity  Catalysis of the Hydrolysis of Alpha (2 >3) Alpha (2 >6) Alpha (2 >8) Glycosidic Linkages of Terminal Sialic Residues in Oligosaccharides Glycoproteins Glycolipids Colominic Acid and Synthetic Substrates. 
    46789   Host Cell Surface Receptor Binding  Interacting Selectively and Non Covalently with a Receptor On the Host Cell Surface. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B,C
    Common Name Human
    Scientific Name Homo sapiens  
    Gene lnir, nectin-4, prr4, pvrl4
    Host Scientific Name Escherichia coli  
    Host Strain Bl21
    Host Vector Type Plasmid
    Host Plasmid Name pET-21a


    Chain A
    Common Name Mev
    Scientific Name Measles virus  
    Strain ICHINOSE-B95A
    Gene h, hemagglutinin
    Host Scientific Name Trichoplusia ni  
    Host Cell Line Hifive Insect Cells
    Host Vector Type Baculovirus
    Host Plasmid Name pFast-bac1


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    1 1q22-q23.2 81607     poliovirus receptor-related 4 PVRL4    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs150247524 LS-SNP   dbSNP   B 7 D - > E Bend 90% (Exposed) 1 161049705
    rs3737786 LS-SNP   dbSNP   B 22 F - > L Beta Ladder 19% (Intermediate) 1 161049662
    rs200474573 LS-SNP   dbSNP   B 24 R - > Q Coil 55% (Exposed) 1 161049655
    rs142201196 LS-SNP   dbSNP   B 28 G - > D Turn 10% (Intermediate) 1 161049643
    rs143991457 LS-SNP   dbSNP   B 37 A - > S Beta Ladder 7% (Buried) 1 161049617
    rs139707654 LS-SNP   dbSNP   B 37 A - > D Beta Ladder 7% (Buried) 1 161049616
    rs142765500 LS-SNP   dbSNP   B 54 K - > R Bend 40% (Exposed) 1 161049565
    rs35434391 LS-SNP   dbSNP   B 73 P - > T Bend 97% (Exposed) 1 161049509
    rs78105657 LS-SNP   dbSNP   B 76 P - > L Turn 58% (Exposed) 1 161049499