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Topoisomerase II-DNA-AMPPNP complex
Biology and Chemistry Report
4GFH
  •   Structure Details   Hide

    Structure Keywords

    Keywords Isomerase/DNA
    Text TOPOISOMERASE, PROTEIN-DNA COMPLEX, DNA SUPERCOILING, DNA REPLICATION, ATP-BINDING, DNA-BINDING, ISOMERASE, NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, ISOMERASE-DNA COMPLEX

    Polymeric Molecules

    Chain A,F
    Description DNA topoisomerase 2 
    Fragment UNP RESIDUES 1-1177 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 136356.0 
    Source Method genetically manipulated  
    Entity Name DNA topoisomerase II 
    Chain B,G
    Description DNA (5'-D(P*CP*CP*TP*AP*CP*TP*GP*CP*TP*AP*C)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 3269.2 
    Source Method synthetic  
    Chain C,H
    Description DNA (5'-D(*CP*GP*CP*GP*GP*TP*AP*GP*CP*AP*GP*TP*AP*GP*G)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 4675.1 
    Source Method synthetic  
    Chain D,I
    Description DNA (5'-D(P*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*(TSP))-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 3429.3 
    Source Method synthetic  
    Chain E,J
    Description DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*CP*GP*TP*CP*AP*TP*CP*C)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 4530.0 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ANP  PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER  C10 H17 N6 O12 P3   506.20  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,F TOP2_YEAST D6W191     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A F  5.99.1.3      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A,F
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain ATCC 204508 / S288C
    Gene top2, tor3, ynl088w, n2244


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    XIV - 855636     DNA topoisomerase 2 TOP2