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Crystal structure of Gentlyase, the neutral metalloprotease of Paenibacillus polymyxa
Biology and Chemistry Report
4GER
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text protease, metalloproteinase, tissue disaggregation, thermolysin-like protease, HYDROLASE

    Polymeric Molecules

    Chain A,B
    Description Gentlyase metalloprotease 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 32408.1 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CA  CALCIUM ION  Ca   40.08  View 
    LYS  LYSINE  C6 H15 N2 O2   147.20  View 
    THR  THREONINE  C4 H9 N O3   119.12  View 
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B NPRE_PAEPO P29148     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  3.4.24.28      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6508   Proteolysis  The Hydrolysis of Proteins Into Smaller Polypeptides And/or Amino Acids by Cleavage of Their Peptide Bonds. 
    4222   Metalloendopeptidase Activity  Catalysis of the Hydrolysis of Internal Alpha Peptide Bonds in a Polypeptide Chain by a Mechanism in Which Water Acts As a Nucleophile One or Two Metal Ions Hold the Water Molecule in Place and Charged Amino Acid Side Chains Are Ligands For the Metal Ions. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Paenibacillus polymyxa  
    Host Scientific Name Bacillus amyloliquefaciens