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B-Raf V600E Kinase Domain Bound to a Type II Dihydroquinazoline Inhibitor
Biology and Chemistry Report
4G9R
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/TRANSFERASE INHIBITOR
    Text Inhibitor, Type II, Transferase, Kinase, TRANSFERASE-TRANSFERASE INHIBITOR complex

    Polymeric Molecules

    Chain A,B
    Description Serine/threonine-protein kinase B-raf 
    Fragment Kinase Domain (UNP residues 432-726) 
    Mutation V600E 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 35247.9 
    Source Method genetically manipulated  
    Entity Name Proto-oncogene B-Raf, p94, v-Raf murine sarcoma viral oncogene homolog B1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    B1E  3-(2-cyanopropan-2-yl)-N-{4-methyl-3-[(3-methyl-4-oxo-3,4-dihydroquinazolin-6-yl)amino]phenyl}benzamide  C27 H25 N5 O2   451.52  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B BRAF_HUMAN A4D1T4     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  2.7.11.1      
     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene braf, braf1, rafb1
    Host Scientific Name Trichoplusia ni  
    Host Strain High Five


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7q34 673     B-Raf proto-oncogene, serine/threonine kinase BRAF    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs180177032 LS-SNP   dbSNP   A 462 R - > I Beta Ladder 54% (Exposed) 7 140481423
    rs180177033 LS-SNP   dbSNP   A 463 I - > S Beta Ladder 51% (Exposed) 7 140481420 B1E
    rs121913348 LS-SNP   dbSNP   A 464 G - > EV Beta Ladder 30% (Intermediate) 7 140481417
    rs121913349 LS-SNP   dbSNP   A 464 G - > R Beta Ladder 30% (Intermediate) 7 140481418
    rs121913351 LS-SNP   dbSNP   A 466 G - > AEV Beta Ladder 39% (Exposed) 7 140481411
    rs121913353 LS-SNP   dbSNP   A 466 G - > R Beta Ladder 39% (Exposed) 7 140481412
    rs121913355 LS-SNP   dbSNP   A 469 G - > AEV Beta Ladder 6% (Buried) 7 140481402
    rs121913357 LS-SNP   dbSNP   A 469 G - > R Beta Ladder 6% (Buried) 7 140481403
    rs121913376 LS-SNP   dbSNP   A 471 V - > F Beta Ladder 22% (Intermediate) 7 140481397 B1E
    rs180177036 LS-SNP   dbSNP   A 485 L - > F Coil 13% (Intermediate) 7 140477853
    rs180177037 LS-SNP   dbSNP   A 499 K - > E Helix 54% (Exposed) 7 140477813
    rs180177039 LS-SNP   dbSNP   A 501 E - > G Helix 12% (Intermediate) 7 140477806 B1E
    rs180177038 LS-SNP   dbSNP   A 501 E - > K Helix 12% (Intermediate) 7 140477807 B1E
    rs180177041 LS-SNP   dbSNP   A 534 G - > R Beta Ladder 48% (Exposed) 7 140476806
    rs139510971 LS-SNP   dbSNP   A 572 I - > F Coil 14% (Intermediate) 7 140454014 B1E
    rs180177040 LS-SNP   dbSNP   A 581 N - > D 3/10 Helix 2% (Buried) 7 140453987
    rs121913370 LS-SNP   dbSNP   A 581 N - > S 3/10 Helix 2% (Buried) 7 140453193
    rs121913340 LS-SNP   dbSNP   A 586 E - > K Turn 38% (Exposed) 7 140453179
    rs121913335 LS-SNP   dbSNP   A 587 D - > A Turn 54% (Exposed) 7 140453175
    rs121913336 LS-SNP   dbSNP   A 587 D - > E Turn 54% (Exposed) 7 140453174
    rs121913362 LS-SNP   dbSNP   A 592 I - > M Beta Ladder 1% (Buried) 7 140453159 B1E
    rs121913363 LS-SNP   dbSNP   A 592 I - > V Beta Ladder 1% (Buried) 7 140453161 B1E
    rs55939351 LS-SNP   dbSNP   A 592 I - > K Beta Ladder 1% (Buried) 7 140453160 B1E
    rs121913337 LS-SNP   dbSNP   A 594 D - > E Coil 29% (Intermediate) 7 140453153 B1E
    rs121913338 LS-SNP   dbSNP   A 594 D - > GV Coil 29% (Intermediate) 7 140453154 B1E
    rs121913341 LS-SNP   dbSNP   A 595 F - > L Coil 38% (Exposed) 7 140453150 B1E
    rs121913225 LS-SNP   dbSNP   A 595 F - > S Coil 38% (Exposed) 7 140453151 B1E
    rs121913361 LS-SNP   dbSNP   A 596 G - > R Coil 19% (Intermediate) 7 140453149
    rs121913366 LS-SNP   dbSNP   A 597 L - > QR Bend 18% (Intermediate) 7 140453145
    rs121913369 LS-SNP   dbSNP   A 597 L - > V Bend 18% (Intermediate) 7 140453146
    rs121913375 LS-SNP   dbSNP   A 599 T - > I Bend 37% (Exposed) 7 140453139
    rs113488022 LS-SNP   dbSNP   A 600 V - > AE Coil 32% (Intermediate) 7 140453136
    rs121913378 LS-SNP   dbSNP   A 600 V - > LM Coil 32% (Intermediate) 7 140453137
    rs121913364 LS-SNP   dbSNP   A 601 K - > E Coil 14% (Intermediate) 7 140453134 B1E
    rs121913365 LS-SNP   dbSNP   A 601 K - > N Coil 14% (Intermediate) 7 140453132 B1E
    rs180177042 LS-SNP   dbSNP   A 638 D - > E Helix 1% (Buried) 7 140449165
    rs55715359 LS-SNP   dbSNP   A 692 L - > S Helix 4% (Buried) 7 140439664