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An Information Portal to 105025 Biological Macromolecular Structures

Human B-Raf Kinase Domain bound to a Type II Pyrazolopyridine Inhibitor
Biology and Chemistry Report
4G9C
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/TRANSFERASE INHIBITOR
    Text DFG-out, Inhibitor, Type II, Transferase, Kinase, TRANSFERASE-TRANSFERASE INHIBITOR complex

    Polymeric Molecules

    Chain A,B
    Description Serine/threonine-protein kinase B-raf 
    Fragment Kinase Domain (UNP residues 432-726) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 35217.9 
    Source Method genetically manipulated  
    Entity Name Proto-oncogene B-Raf, p94, v-Raf murine sarcoma viral oncogene homolog B1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    0WP  3-{[3-(2-cyanopropan-2-yl)benzoyl]amino}-2,6-difluoro-N-(3-methoxy-2H-pyrazolo[3,4-b]pyridin-5-yl)benzamide  C25 H20 F2 N6 O3   490.46  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B BRAF_HUMAN A4D1T4     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  2.7.11.1      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4674   Protein Serine/threonine Kinase Activity  Catalysis of the Reactions: ATP + Protein Serine = Adp + Protein Serine Phosphate and ATP + Protein Threonine = Adp + Protein Threonine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene braf, braf1, rafb1
    Host Scientific Name Trichoplusia ni  
    Host Strain High Five


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7q34 673     B-Raf proto-oncogene, serine/threonine kinase BRAF    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs180177032 LS-SNP   dbSNP   A 462 R - > I Beta Ladder 70% (Exposed) 7 140481423
    rs180177033 LS-SNP   dbSNP   A 463 I - > S Beta Ladder 37% (Exposed) 7 140481420 0WP
    rs121913348 LS-SNP   dbSNP   A 464 G - > EV Beta Ladder 21% (Intermediate) 7 140481417
    rs121913349 LS-SNP   dbSNP   A 464 G - > R Beta Ladder 21% (Intermediate) 7 140481418
    rs121913351 LS-SNP   dbSNP   A 466 G - > AEV Coil 6% (Buried) 7 140481411
    rs121913353 LS-SNP   dbSNP   A 466 G - > R Coil 6% (Buried) 7 140481412
    rs121913355 LS-SNP   dbSNP   A 469 G - > AEV Bend 6% (Buried) 7 140481402
    rs121913357 LS-SNP   dbSNP   A 469 G - > R Bend 6% (Buried) 7 140481403
    rs121913376 LS-SNP   dbSNP   A 471 V - > F Beta Ladder 12% (Intermediate) 7 140481397 0WP
    rs180177036 LS-SNP   dbSNP   A 485 L - > F Coil 5% (Buried) 7 140477853
    rs180177037 LS-SNP   dbSNP   A 499 K - > E Helix 69% (Exposed) 7 140477813
    rs180177039 LS-SNP   dbSNP   A 501 E - > G Helix 23% (Intermediate) 7 140477806 0WP
    rs180177038 LS-SNP   dbSNP   A 501 E - > K Helix 23% (Intermediate) 7 140477807 0WP
    rs180177041 LS-SNP   dbSNP   A 534 G - > R Beta Ladder 44% (Exposed) 7 140476806
    rs139510971 LS-SNP   dbSNP   A 572 I - > F Coil 12% (Intermediate) 7 140454014 0WP
    rs180177040 LS-SNP   dbSNP   A 581 N - > D Turn 0% (Buried) 7 140453987
    rs121913370 LS-SNP   dbSNP   A 581 N - > S Turn 0% (Buried) 7 140453193
    rs121913340 LS-SNP   dbSNP   A 586 E - > K Turn 39% (Exposed) 7 140453179
    rs121913335 LS-SNP   dbSNP   A 587 D - > A Turn 55% (Exposed) 7 140453175
    rs121913336 LS-SNP   dbSNP   A 587 D - > E Turn 55% (Exposed) 7 140453174
    rs121913362 LS-SNP   dbSNP   A 592 I - > M Beta Ladder 1% (Buried) 7 140453159 0WP
    rs121913363 LS-SNP   dbSNP   A 592 I - > V Beta Ladder 1% (Buried) 7 140453161 0WP
    rs55939351 LS-SNP   dbSNP   A 592 I - > K Beta Ladder 1% (Buried) 7 140453160 0WP
    rs121913337 LS-SNP   dbSNP   A 594 D - > E Coil 46% (Exposed) 7 140453153 0WP
    rs121913338 LS-SNP   dbSNP   A 594 D - > GV Coil 46% (Exposed) 7 140453154 0WP
    rs121913341 LS-SNP   dbSNP   A 595 F - > L Coil 16% (Intermediate) 7 140453150 0WP
    rs121913225 LS-SNP   dbSNP   A 595 F - > S Coil 16% (Intermediate) 7 140453151 0WP
    rs121913361 LS-SNP   dbSNP   A 596 G - > R Turn 25% (Intermediate) 7 140453149
    rs121913366 LS-SNP   dbSNP   A 597 L - > QR Turn 70% (Exposed) 7 140453145
    rs121913369 LS-SNP   dbSNP   A 597 L - > V Turn 70% (Exposed) 7 140453146
    rs121913375 LS-SNP   dbSNP   A 599 T - > I Bend 17% (Intermediate) 7 140453139 0WP
    rs113488022 LS-SNP   dbSNP   A 600 V - > AE Coil 37% (Exposed) 7 140453136
    rs121913378 LS-SNP   dbSNP   A 600 V - > LM Coil 37% (Exposed) 7 140453137
    rs121913364 LS-SNP   dbSNP   A 601 K - > E Coil 69% (Exposed) 7 140453134
    rs121913365 LS-SNP   dbSNP   A 601 K - > N Coil 69% (Exposed) 7 140453132
    rs180177042 LS-SNP   dbSNP   A 638 D - > E Helix 1% (Buried) 7 140449165
    rs55715359 LS-SNP   dbSNP   A 692 L - > S Helix 8% (Buried) 7 140439664