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An Information Portal to 105212 Biological Macromolecular Structures

X-ray structure of PI3K-gamma bound to a 4-(morpholin-4-yl)- (6-oxo-1,6-dihydropyrimidin-2-yl)amide inhibitor
Biology and Chemistry Report
4G11
  •   Structure Details   Hide

    Structure Keywords

    Keywords Transferase/Transferase Inhibitor
    Text PHOSPHOINOSITIDE 3-KINASE GAMMA, SECONDARY MESSENGER GENERATION, Transferase-Transferase Inhibitor complex

    Polymeric Molecules

    Chain A
    Description Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform 
    Fragment UNP residues 144-1102 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 110728.0 
    Source Method genetically manipulated  
    Entity Name PI3-kinase subunit gamma, PI3K-gamma, PI3Kgamma, PtdIns-3-kinase subunit gamma, Phosphatidylinositol 4,5-bisphosphate 3-kinase 110 kDa catalytic subunit gamma, PtdIns-3-kinase subunit p110-gamma, p110gamma, Phosphoinositide-3-kinase catalytic gamma polypeptide, Serine/threonine protein kinase PIK3CG, p120-PI3K 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    0W7  2-[4-(morpholin-4-yl)-6-oxo-1,6-dihydropyrimidin-2-yl]-N-phenylacetamide  C16 H18 N4 O3   314.34  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A PK3CG_HUMAN A4D0Q6     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.1.153      
    2.7.11.1      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    46854   Phosphatidylinositol Phosphorylation  The Process of Introducing One or More Phosphate Groups Into a Phosphatidylinositol Any Glycerophosphoinositol Having One Phosphatidyl Group Esterified to One of the Hydroxy Groups of Inositol. 
    48015   Phosphatidylinositol Mediated Signaling  A Series of Molecular Signals in Which a Cell Uses a Phosphatidylinositol Mediated Signaling to Convert a Signal Into a Response. Phosphatidylinositols Include Phosphatidylinositol (ptdins) and Its Phosphorylated Derivatives. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 
    16773   Phosphotransferase Activity Alcohol Group As Acceptor  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to an Alcohol Group (acceptor). 


    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene pik3cg
    Host Scientific Name Spodoptera frugiperda  
    Host Strain Sf9
    Host Vector Type Virus
    Host Plasmid Name baculovirus


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    7 7q22.3 5294     phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma PIK3CG    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs145342459 LS-SNP   dbSNP   A 143 P - > L Coil 71% (Exposed) 7 106508434
    rs137951629 LS-SNP   dbSNP   A 144 S - > P Coil 57% (Exposed) 7 106508436
    rs200355499 LS-SNP   dbSNP   A 146 E - > Q Helix 56% (Exposed) 7 106508442
    rs138562997 LS-SNP   dbSNP   A 158 I - > M Helix 1% (Buried) 7 106508480
    rs182921583 LS-SNP   dbSNP   A 197 A - > T Helix 8% (Buried) 7 106508595
    rs149432307 LS-SNP   dbSNP   A 238 D - > N Turn 72% (Exposed) 7 106508718
    rs148558253 LS-SNP   dbSNP   A 295 H - > R Helix 35% (Intermediate) 7 106508890
    rs112943477 LS-SNP   dbSNP   A 295 H - > Q Helix 35% (Intermediate) 7 106508891
    rs144045366 LS-SNP   dbSNP   A 306 V - > E Beta Ladder 8% (Buried) 7 106508923
    rs147267699 LS-SNP   dbSNP   A 316 D - > H 3/10 Helix 9% (Intermediate) 7 106508952
    rs62001903 LS-SNP   dbSNP   A 358 D - > NY Coil 68% (Exposed) 7 106509078
    rs144565710 LS-SNP   dbSNP   A 359 R - > H Bend 69% (Exposed) 7 106509082
    rs187257485 LS-SNP   dbSNP   A 359 R - > C Bend 69% (Exposed) 7 106509081
    rs138274380 LS-SNP   dbSNP   A 360 K - > Q Beta Ladder 44% (Exposed) 7 106509084
    rs148196703 LS-SNP   dbSNP   A 412 V - > M Beta Ladder 46% (Exposed) 7 106509240
    rs190369559 LS-SNP   dbSNP   A 418 I - > V Beta Ladder 16% (Intermediate) 7 106509258
    rs201887530 LS-SNP   dbSNP   A 462 Y - > C Beta Ladder 10% (Intermediate) 7 106509391
    rs200175951 LS-SNP   dbSNP   A 477 R - > L Coil 60% (Exposed) 7 106509436
    rs138344795 LS-SNP   dbSNP   A 477 R - > C Coil 60% (Exposed) 7 106509435
    rs143954315 LS-SNP   dbSNP   A 488 S - > F Coil 78% (Exposed) 7 106509469
    rs147304217 LS-SNP   dbSNP   A 489 G - > E Coil 156% (Exposed) 7 106509472
    rs201694007 LS-SNP   dbSNP   A 506 T - > A Coil 3% (Buried) 7 106509522
    rs140765012 LS-SNP   dbSNP   A 509 D - > E Coil 42% (Exposed) 7 106509533
    rs199845412 LS-SNP   dbSNP   A 514 M - > V Beta Ladder 0% (Buried) 7 106509546
    rs61749915 LS-SNP   dbSNP   A 522 N - > S Coil 27% (Intermediate) 7 106509571
    rs139426517 LS-SNP   dbSNP   A 557 A - > V Helix 53% (Exposed) 7 106509676
    rs146487441 LS-SNP   dbSNP   A 588 A - > T 3/10 Helix 0% (Buried) 7 106509768
    rs140864387 LS-SNP   dbSNP   A 590 P - > H Helix 3% (Buried) 7 106509775
    rs28763989 LS-SNP   dbSNP   A 643 I - > V Helix 1% (Buried) 7 106509933
    rs185704316 LS-SNP   dbSNP   A 646 Q - > P Helix 31% (Intermediate) 7 106509943
    rs145539077 LS-SNP   dbSNP   A 655 D - > N Helix 23% (Intermediate) 7 106509969
    rs187473519 LS-SNP   dbSNP   A 678 A - > T Helix 1% (Buried) 7 106513018
    rs199590448 LS-SNP   dbSNP   A 720 Y - > C Helix 0% (Buried) 7 106513255
    rs201832591 LS-SNP   dbSNP   A 722 R - > S Turn 23% (Intermediate) 7 106513262
    rs201158285 LS-SNP   dbSNP   A 723 G - > A Turn 0% (Buried) 7 106513264
    rs148158603 LS-SNP   dbSNP   A 733 T - > N Helix 25% (Intermediate) 7 106513294
    rs182430488 LS-SNP   dbSNP   A 774 L - > M Helix 12% (Intermediate) 7 106515177
    rs144096589 LS-SNP   dbSNP   A 776 N - > S Turn 67% (Exposed) 7 106515184
    rs146675267 LS-SNP   dbSNP   A 781 E - > K Bend 89% (Exposed) 7 106515198
    rs139231934 LS-SNP   dbSNP   A 790 G - > V Beta Ladder 0% (Buried) 7 106515226
    rs143259740 LS-SNP   dbSNP   A 795 A - > V Beta Ladder 32% (Intermediate) 7 106515241
    rs150845153 LS-SNP   dbSNP   A 856 E - > V Helix 25% (Intermediate) 7 106522590
    rs28763991 LS-SNP   dbSNP   A 857 T - > A Helix 67% (Exposed) 7 106522592
    rs149553647 LS-SNP   dbSNP   A 873 G - > V Bend 12% (Intermediate) 7 106522641
    rs144246024 LS-SNP   dbSNP   A 881 I - > T Coil 6% (Buried) 7 106523490 0W7
    rs111306935 LS-SNP   dbSNP   A 898 N - > D Bend 80% (Exposed) 7 106523540
    rs200816202 LS-SNP   dbSNP   A 934 G - > V Helix 0% (Buried) 7 106524640
    rs139361926 LS-SNP   dbSNP   A 944 I - > T Coil 15% (Intermediate) 7 106524670
    rs187255851 LS-SNP   dbSNP   A 990 D - > H Helix 0% (Buried) 7 106526675
    rs200879596 LS-SNP   dbSNP   A 995 M - > L Helix 2% (Buried) 7 106526690
    rs139918549 LS-SNP   dbSNP   A 1003 S - > G Coil 8% (Buried) 7 106526714
    rs201355541 LS-SNP   dbSNP   A 1014 V - > I Helix 8% (Buried) 7 106545563
    rs142182764 LS-SNP   dbSNP   A 1021 R - > S Helix 13% (Intermediate) 7 106545584
    rs151166020 LS-SNP   dbSNP   A 1049 E - > D Helix 32% (Intermediate) 7 106545670
    rs113001043 LS-SNP   dbSNP   A 1062 E - > K Helix 70% (Exposed) 7 106545707
    rs151301577 LS-SNP   dbSNP   A 1065 K - > E Helix 46% (Exposed) 7 106545716
    rs185548488 LS-SNP   dbSNP   A 1073 E - > D Helix 31% (Intermediate) 7 106545742