An Information Portal to 111749 Biological Macromolecular Structures

Structural characterization of H-1 Parvovirus: comparison of infectious virions to replication defective particles
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Keywords virus/dna
    Text Beta-barrel, ssDNA binding, ssDNA, icosahedral virus, virus, virus capsid protein, cell, virus-dna complex

    Polymeric Molecules

    Chain A
    Description Capsid protein VP1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 81342.0 
    Source Method natural source  
    Entity Name Coat protein VP1 
    Chain C
    Description DNA (5'-D(P*CP*TP*GP*AP*CP*TP*TP*CP*AP*A)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 3004.0 
    Source Method natural source  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CL  CHLORIDE ION  Cl   35.45  View 
    DC  2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE  C9 H14 N3 O7 P   307.20  View 
    EDO  1,2-ETHANEDIOL  C2 H6 O2   62.07  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
    NA  SODIUM ION  Na   22.99  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A CAPSD_PAVHH P03136     

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    19028   Viral Capsid  The Protein Coat That Surrounds the Infective Nucleic Acid in Some Virus Particles. It Comprises Numerous Regularly Arranged Subunits or Capsomeres. 
    5198   Structural Molecule Activity  The Action of a Molecule That Contributes to the Structural Integrity of a Complex or Assembly Within or Outside a Cell. 

  •   Gene Details   Hide

    Natural Source

    Chain C
    Scientific Name H-1 parvovirus  
    Chain A
    Scientific Name H-1 parvovirus