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Crystal structure of rcl with 6-cyclopentyl-AMP
Biology and Chemistry Report
4FYI
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text Deoxyribonucleoside 5'-monophosphate N-glycosidase, HYDROLASE

    Polymeric Molecules

    Chain A,B,C,D
    Description Deoxyribonucleoside 5'-monophosphate N-glycosidase 
    Fragment UNP residues 11-151 
    Mutation D69N 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17173.5 
    Source Method genetically manipulated  
    Entity Name c-Myc-responsive protein Rcl 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    6C6  N-cyclopentyladenosine 5'-(dihydrogen phosphate)  C15 H22 N5 O7 P   415.34  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D DNPH1_RAT O35820     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B C D  3.2.2      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D
    GO ID   Ontology GO Term Definition
    9159   Deoxyribonucleoside Monophosphate Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of a Deoxyribonucleoside Monophosphate a Compound Consisting of a Nucleobase Linked to a Deoxyribose Sugar Esterified with Phosphate On the Sugar. 
    50144   Nucleoside Deoxyribosyltransferase Activity  Catalysis of the Reaction: 2 Deoxy D Ribosyl Base1 + Base2 = 2 Deoxy D Ribosyl Base2 + Base1. 
    70694   Deoxyribonucleoside 5' Monophosphate N Glycosidase Activity  Catalysis of the Reaction: a Deoxyribonucleoside 5' Monophosphate + H2o = Deoxyribose 5 Monophosphate + a Purine or Pyrimidine Base. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D
    Common Name Brown Rat Rat Rats
    Scientific Name Rattus norvegicus  
    Gene rcl
    Host Scientific Name Escherichia coli  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    9 9q12 171047     2'-deoxynucleoside 5'-phosphate N-hydrolase 1 DNPH1