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Crystal structure of pyridoxal biosynthesis lyase PdxS from Pyrococcus
Biology and Chemistry Report
4FIR
  •   Structure Details   Hide

    Structure Keywords

    Keywords lyase
    Text Pyrococcus horikoshii, pdxS, pyridoxal biosynthesis lyase, pyridoxal 5 -phosphate (PLP), lyase

    Polymeric Molecules

    Chain A,B,C,D,E,F
    Description Pyridoxal biosynthesis lyase pdxS 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 37065.6 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    R5P  RIBOSE-5-PHOSPHATE  C5 H11 O8 P   230.11  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D,E,F PDXS_PYRHO O59080     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B C D E F  4      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D,E,F
    GO ID   Ontology GO Term Definition
    16829   Lyase Activity  Catalysis of the Cleavage of C C C O C N and Other Bonds by Other Means Than by Hydrolysis or Oxidation or Conversely Adding a Group to a Double Bond. They Differ From Other Enzymes in That Two Substrates Are Involved in One Reaction Direction But Only One in the Other Direction. When Acting On the Single Substrate a Molecule Is Eliminated and This Generates Either a New Double Bond or a New Ring. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D,E,F
    Scientific Name Pyrococcus horikoshii  
    Strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3
    Gene pdxs, ph1355
    Host Scientific Name Escherichia coli  
    Host Vector Type Plasmid
    Host Plasmid Name pET-21a(+)


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 1443680     pyridoxal biosynthesis lyase PdxS PH1355