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An Information Portal to 107620 Biological Macromolecular Structures

S. cerevisiae Ubc13-N79A
Biology and Chemistry Report
4FH1
  •   Structure Details   Hide

    Structure Keywords

    Keywords LIGASE
    Text Ubiquitin Conjugating Enzyme, LIGASE

    Polymeric Molecules

    Chain A
    Description Ubiquitin-conjugating enzyme E2 13 
    Mutation N79A, C87S 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17431.1 
    Source Method genetically manipulated  
    Entity Name Ubiquitin carrier protein 13, Ubiquitin-protein ligase 13 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    NHE  2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID  C8 H17 N O3 S   207.29  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A UBC13_YEAST D6VS79     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    6.3.2.19      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    209   Protein Polyubiquitination  Addition of Multiple Ubiquitin Groups to a Protein Forming a Ubiquitin Chain. 
    6301   Postreplication Repair  The Conversion of DNA Damage Induced Single Stranded Gaps Into Large Molecular Weight DNA After Replication. Includes Pathways That Remove Replication Blocking Lesions in Conjunction with DNA Replication. 
    6513   Protein Monoubiquitination  Addition of a Single Ubiquitin Group to a Protein. 
    10994   Free Ubiquitin Chain Polymerization  The Process of Creating Free Ubiquitin Chains Compounds Composed of a Large Number of Ubiquitin Monomers. These Chains Are Not Conjugated to a Protein. 
    16567   Protein Ubiquitination  The Process in Which One or More Ubiquitin Groups Are Added to a Protein. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    31371   Ubiquitin Conjugating Enzyme Complex  Any Complex That Possesses Ubiquitin Conjugating Enzyme Activity. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    4842   Ubiquitin Protein Transferase Activity  Catalysis of the Transfer of Ubiquitin From One Protein to Another Via the Reaction X Ub + Y > Y Ub + X Where Both X Ub and Y Ub Are Covalent Linkages. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16874   Ligase Activity  Catalysis of the Joining of Two Substances or Two Groups Within a Single Molecule with the Concomitant Hydrolysis of the Diphosphate Bond in ATP or a Similar Triphosphate. 
    16881   Acid Amino Acid Ligase Activity  Catalysis of the Ligation of an Acid to an Amino Acid Via a Carbon Nitrogen Bond with the Concomitant Hydrolysis of the Diphosphate Bond in ATP or a Similar Triphosphate. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain ATCC 204508 / S288C
    Gene ubc13, ydr092w, yd6652.04
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)plyss
    Host Vector Type Pet32a


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    IV - 851666     E2 ubiquitin-conjugating protein UBC13 UBC13