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Crystal structure of KAP beta2-PY-NLS
Biology and Chemistry Report
4FDD
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSPORT PROTEIN
    Text HEAT repeats, Karyopherin, nuclear import, protein transport, importin, transportin, TRANSPORT PROTEIN

    Polymeric Molecules

    Chain A
    Description Transportin-1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 96623.5 
    Source Method genetically manipulated  
    Entity Name Importin beta-2, Karyopherin beta-2, M9 region interaction protein, MIP 
    Chain B
    Description RNA-binding protein FUS 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 3296.6 
    Source Method genetically manipulated  
    Entity Name 75 kDa DNA-pairing protein, Oncogene FUS, Oncogene TLS, POMp75, Translocated in liposarcoma protein 

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A TNPO1_HUMAN Q92973     
    B FUS_HUMAN P35637     

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6886   Intracellular Protein Transport  The Directed Movement of Proteins in a Cell Including the Movement of Proteins Between Specific Compartments or Structures Within a Cell Such As Organelles of a Eukaryotic Cell. 
    8536   Ran Gtpase Binding  Interacting Selectively and Non Covalently with Ran a Conserved Ras Like GTP Binding Protein Implicated in Nucleocytoplasmic Transport Cell Cycle Progression Spindle Assembly Nuclear Organization and Nuclear Envelope (ne) Assembly. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene fus, tls
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pGexTev


    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene kpnb2, mip1, tnpo1, transportin-1, trn
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pGexTev


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    5 5q13.2 3842     transportin 1 TNPO1    
    16 16p11.2 2521     FUS RNA binding protein FUS    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs25661 LS-SNP   dbSNP   A 26 D - > E Coil 42% (Exposed) 5 72144298
    rs112893057 LS-SNP   dbSNP   A 102 S - > T Bend 77% (Exposed) 5 72151723
    rs200627642 LS-SNP   dbSNP   A 108 A - > V Helix 51% (Exposed) 5 72151742
    rs200553704 LS-SNP   dbSNP   A 119 S - > F Helix 48% (Exposed) 5 72157659
    rs41271137 LS-SNP   dbSNP   A 155 I - > F Helix 5% (Buried) 5 72161447
    rs113424229 LS-SNP   dbSNP   A 174 I - > V Helix 47% (Exposed) 5 72161504
    rs149944168 LS-SNP   dbSNP   A 215 S - > C Helix 38% (Exposed) 5 72168537
    rs1135608 LS-SNP   dbSNP   A 217 I - > T Helix 8% (Buried) 5 72168543
    rs74481451 LS-SNP   dbSNP   A 285 E - > D Turn 62% (Exposed) 5 72173132
    rs144997390 LS-SNP   dbSNP   A 287 P - > R Turn 97% (Exposed) 5 72173137
    rs201671324 LS-SNP   dbSNP   A 289 C - > R Helix 2% (Buried) 5 72173142
    rs200584417 LS-SNP   dbSNP   A 298 P - > S Helix 58% (Exposed) 5 72173169
    rs142209295 LS-SNP   dbSNP   A 397 H - > R Helix 32% (Intermediate) 5 72182960
    rs140476981 LS-SNP   dbSNP   A 400 P - > A Helix 59% (Exposed) 5 72182968
    rs138270381 LS-SNP   dbSNP   A 454 V - > L Helix 0% (Buried) 5 72183985
    rs140988378 LS-SNP   dbSNP   A 476 T - > M Turn 46% (Exposed) 5 72184052
    rs150255663 LS-SNP   dbSNP   A 488 R - > C Helix 14% (Intermediate) 5 72184087
    rs138674722 LS-SNP   dbSNP   A 575 M - > T Helix 59% (Exposed) 5 72187683
    rs201811400 LS-SNP   dbSNP   A 594 A - > T Helix 1% (Buried) 5 72188981
    rs200521874 LS-SNP   dbSNP   A 686 S - > C Helix 9% (Intermediate) 5 72189467
    rs199950184 LS-SNP   dbSNP   A 744 Q - > R 3/10 Helix 47% (Exposed) 5 72192895
    rs201701131 LS-SNP   dbSNP   A 821 I - > T Helix 5% (Buried) 5 72196872
    rs113153605 LS-SNP   dbSNP   A 839 V - > I Helix 0% (Buried) 5 72199560
    rs121909667 LS-SNP   dbSNP   B 517 H - > Q Helix 28% (Intermediate) 16 31202729
    rs121909669 LS-SNP   dbSNP   B 518 R - > K Helix 1% (Buried) 16 31202731
    rs121909668 LS-SNP   dbSNP   B 521 R - > G Helix 29% (Intermediate) 16 31202739
    rs121909670 LS-SNP   dbSNP   B 521 R - > C Helix 29% (Intermediate) 16 31202739
    rs121909671 LS-SNP   dbSNP   B 521 R - > H Helix 29% (Intermediate) 16 31202740