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Crystal structure of human 17beta-hydroxysteroid dehydrogenase type 5 in complex with 3-((3,4-dihydroisoquinolin-2(1H)-yl)sulfonyl)benzoic acid (17)
Biology and Chemistry Report
4FAM
  •   Structure Details   Hide

    Structure Keywords

    Keywords oxidoreductase/oxidoreductase inhibitor
    Text aldo-keto reductase, oxidoreductase-oxidoreductase inhibitor complex

    Polymeric Molecules

    Chain A,B
    Description Aldo-keto reductase family 1 member C3 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 37977.7 
    Source Method genetically manipulated  
    Entity Name 17-beta-hydroxysteroid dehydrogenase type 5, 17-beta-HSD 5, 3-alpha-HSD type II, brain, 3-alpha-hydroxysteroid dehydrogenase type 2, 3-alpha-HSD type 2, Chlordecone reductase homolog HAKRb, Dihydrodiol dehydrogenase 3, DD-3, DD3, Dihydrodiol dehydrogenase type I, HA1753, Indanol dehydrogenase, Prostaglandin F synthase, PGFS, Testosterone 17-beta-dehydrogenase 5, Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    0SZ  3-(3,4-dihydroisoquinolin-2(1H)-ylsulfonyl)benzoic acid  C16 H15 N O4 S   317.36  View 
    EDO  1,2-ETHANEDIOL  C2 H6 O2   62.07  View 
    NAP  NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE  C21 H28 N7 O17 P3   743.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B AK1C3_HUMAN A8K2V0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  1.1.1.112      
    A B  1.1.1.188      
    A B  1.1.1.239      
    A B  1.1.1.357      
    A B  1.1.1.64      
    A B  1.3.1.20      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    55114   Oxidation Reduction Process  A Metabolic Process That Results in the Removal or Addition of One or More Electrons to or From a Substance with or Without the Concomitant Removal or Addition of a Proton or Protons. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    16491   Oxidoreductase Activity  Catalysis of an Oxidation Reduction (redox) Reaction a Reversible Chemical Reaction in Which the Oxidation State of an Atom or Atoms Within a Molecule Is Altered. One Substrate Acts As a Hydrogen or Electron Donor and Becomes Oxidized While the Other Acts As Hydrogen or Electron Acceptor and Becomes Reduced. 


    Protein Analyses

    Measured Binding Affinities   

     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene akr1c3, ddh1, hsd17b5, kiaa0119, pgfs
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 De3
    Host Vector Type Plasmid
    Host Plasmid Name pET21a


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    10 10p15-p14 8644     aldo-keto reductase family 1, member C3 AKR1C3    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs142429052 LS-SNP   dbSNP   A 6 Q - > L Coil 83% (Exposed) 10 5005653
    rs200791410 LS-SNP   dbSNP   A 6 Q - > H Coil 83% (Exposed) 10 5136654
    rs193920842 LS-SNP   dbSNP   A 9 K - > N Beta Ladder 67% (Exposed) 10 5136663
    rs185807038 LS-SNP   dbSNP   A 15 F - > C Beta Ladder 58% (Exposed) 10 5091047
    rs200972237 LS-SNP   dbSNP   A 23 T - > P Coil 0% (Buried) 10 5005703 NAP
    rs140062662 LS-SNP   dbSNP   A 25 A - > P Coil 4% (Buried) 10 5091076
    rs140293636 LS-SNP   dbSNP   A 37 V - > AT Helix 1% (Buried) 10 5008130
    rs1138569 LS-SNP   dbSNP   A 38 T - > A Helix 0% (Buried) 10 5008133
    rs1138570 LS-SNP   dbSNP   A 38 T - > I Helix 0% (Buried) 10 5008134
    rs149693250 LS-SNP   dbSNP   A 39 K - > R Helix 32% (Intermediate) 10 5008137
    rs146428466 LS-SNP   dbSNP   A 40 L - > W Helix 19% (Intermediate) 10 5008140
    rs200176428 LS-SNP   dbSNP   A 43 E - > K Helix 49% (Exposed) 10 5008148
    rs1138575 LS-SNP   dbSNP   A 47 R - > H Coil 33% (Intermediate) 10 5008161
    rs150753542 LS-SNP   dbSNP   A 47 R - > C Coil 33% (Intermediate) 10 5138656
    rs145911457 LS-SNP   dbSNP   A 49 I - > T Beta Ladder 0% (Buried) 10 5138663
    rs140835897 LS-SNP   dbSNP   A 49 I - > T Beta Ladder 0% (Buried) 10 5008167
    rs139011578 LS-SNP   dbSNP   A 52 A - > G Coil 0% (Buried) 10 5138672
    rs149295644 LS-SNP   dbSNP   A 54 L - > F 3/10 Helix 26% (Intermediate) 10 5008183 0SZ
    rs138675307 LS-SNP   dbSNP   A 54 L - > V 3/10 Helix 26% (Intermediate) 10 5008181 0SZ
    rs145075384 LS-SNP   dbSNP   A 59 E - > K Helix 25% (Intermediate) 10 5138692
    rs61730877 LS-SNP   dbSNP   A 66 R - > Q Helix 32% (Intermediate) 10 5008218
    rs35961894 LS-SNP   dbSNP   A 66 R - > Q Helix 32% (Intermediate) 10 5138714
    rs11551177 LS-SNP   dbSNP   A 77 E - > G 3/10 Helix 70% (Exposed) 10 5138747
    rs148886004 LS-SNP   dbSNP   A 85 L - > F Beta Ladder 0% (Buried) 10 5139626
    rs200981816 LS-SNP   dbSNP   A 90 H - > R Coil 1% (Buried) 10 5139642
    rs202144998 LS-SNP   dbSNP   A 97 P - > S Helix 54% (Exposed) 10 5139662
    rs12387 LS-SNP   dbSNP   A 104 K - > N Helix 45% (Exposed) 10 5139685
    rs190674338 LS-SNP   dbSNP   A 106 A - > V Helix 0% (Buried) 10 5139690
    rs4987102 LS-SNP   dbSNP   A 106 A - > T Helix 0% (Buried) 10 5139689
    rs145644085 LS-SNP   dbSNP   A 111 V - > D Beta Ladder 0% (Buried) 10 5139705
    rs201680078 LS-SNP   dbSNP   A 112 D - > E Beta Ladder 12% (Intermediate) 10 5139709
    rs138455132 LS-SNP   dbSNP   A 125 G - > D Bend 52% (Exposed) 10 5140998
    rs143086735 LS-SNP   dbSNP   A 128 L - > P Bend 39% (Exposed) 10 5141007
    rs28943579 LS-SNP   dbSNP   A 145 C - > Y Helix 12% (Intermediate) 10 5141058
    rs192314534 LS-SNP   dbSNP   A 150 A - > V Helix 12% (Intermediate) 10 5141520
    rs201818208 LS-SNP   dbSNP   A 154 C - > W Helix 0% (Buried) 10 5141533
    rs138882693 LS-SNP   dbSNP   A 160 A - > G Beta Ladder 0% (Buried) 10 5141550
    rs200514658 LS-SNP   dbSNP   A 163 I - > T Beta Ladder 1% (Buried) 10 5141559
    rs35575889 LS-SNP   dbSNP   A 170 R - > C Helix 54% (Exposed) 10 5141579
    rs1131132 LS-SNP   dbSNP   A 175 M - > I Helix 36% (Exposed) 10 5141596
    rs144493319 LS-SNP   dbSNP   A 178 N - > S Turn 76% (Exposed) 10 5141604
    rs34186955 LS-SNP   dbSNP   A 180 P - > S Turn 88% (Exposed) 10 5141609
    rs61730879 LS-SNP   dbSNP   A 183 K - > MR Coil 58% (Exposed) 10 5141619
    rs151229504 LS-SNP   dbSNP   A 195 P - > L Turn 0% (Buried) 10 5144306
    rs139146411 LS-SNP   dbSNP   A 199 R - > Q Coil 15% (Intermediate) 10 5144318
    rs199934766 LS-SNP   dbSNP   A 199 R - > W Coil 15% (Intermediate) 10 5144317
    rs116351688 LS-SNP   dbSNP   A 208 S - > L Helix 62% (Exposed) 10 5144345
    rs200858905 LS-SNP   dbSNP   A 211 I - > T Coil 2% (Buried) 10 5144354
    rs201251234 LS-SNP   dbSNP   A 216 Y - > H Beta Ladder 15% (Intermediate) 10 5144368 NAP,0SZ
    rs3207927 LS-SNP   dbSNP   A 247 K - > R Helix 59% (Exposed) 10 5014835
    rs201848142 LS-SNP   dbSNP   A 255 I - > T Helix 0% (Buried) 10 5144760
    rs28943580 LS-SNP   dbSNP   A 258 R - > C Helix 13% (Intermediate) 10 5037585
    rs201226170 LS-SNP   dbSNP   A 274 E - > K Helix 46% (Exposed) 10 5144816
    rs140613308 LS-SNP   dbSNP   A 276 R - > C Helix 56% (Exposed) 10 5144822 NAP
    rs145625401 LS-SNP   dbSNP   A 290 A - > T Helix 78% (Exposed) 10 5147808
    rs146552480 LS-SNP   dbSNP   A 290 A - > V Helix 78% (Exposed) 10 5147809
    rs1804059 LS-SNP   dbSNP   A 293 M - > I Helix 14% (Intermediate) 10 5147819
    rs11551178 LS-SNP   dbSNP   A 295 A - > S Helix 42% (Exposed) 10 5147823
    rs199763655 LS-SNP   dbSNP   A 297 D - > V Helix 44% (Exposed) 10 5147830
    rs148388480 LS-SNP   dbSNP   A 302 N - > K Coil 71% (Exposed) 10 5147846
    rs141515798 LS-SNP   dbSNP   A 310 S - > T Helix 41% (Exposed) 10 5147869
    rs202095354 LS-SNP   dbSNP   A 315 P - > T Turn 76% (Exposed) 10 5149666