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An Information Portal to 105212 Biological Macromolecular Structures

Y-family DNA polymerase chimera Dbh-Dbh-Dpo4
Biology and Chemistry Report
4F50
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/DNA
    Text Y-family polymerase, TRANSFERASE-DNA complex

    Polymeric Molecules

    Chain A
    Description DNA polymerase IV 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 41019.0 
    Source Method genetically manipulated  
    Entity Name Pol IV 
    Chain P
    Description DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*CP*GP*GP*C)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 3424.3 
    Source Method synthetic  
    Chain T
    Description DNA (5'-D(*CP*CP*GP*CP*CP*T*GP*GP*CP*TP*TP*CP*CP*C)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 4168.7 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CA  CALCIUM ION  Ca   40.08  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A DPO4_SULAC Q4JB80     
    A DPO4_SULSO Q97W02     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.7.7      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6281   DNA Repair  The Process of Restoring DNA After Damage. Genomes Are Subject to Damage by Chemical and Physical Agents in the Environment (e.g. Uv and Ionizing Radiations Chemical Mutagens Fungal and Bacterial Toxins Etc.) and by Free Radicals or Alkylating Agents Endogenously Generated in Metabolism. DNA Is Also Damaged Because of Errors During Its Replication. a Variety of Different DNA Repair Pathways Have Been Reported That Include Direct Reversal Base Excision Repair Nucleotide Excision Repair Photoreactivation Bypass Double Strand Break Repair Pathway and Mismatch Repair Pathway. 
    3684   Damaged DNA Binding  Interacting Selectively and Non Covalently with Damaged Dna. 
    3887   DNA Directed DNA Polymerase Activity  Catalysis of the Reaction: Deoxynucleoside Triphosphate + Dna(n) = Diphosphate + Dna(n+1); the Synthesis of DNA From Deoxyribonucleotide Triphosphates in the Presence of a DNA Template and a 3'hydroxyl Group. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Scientific Name Sulfolobus acidocaldarius, sulfolobus solfataricus  
    Strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770
    Gene dbh, dpo4, dpo4 (s. solfataricus) and dbh (s. acidocaldarius), saci_0554, sso2448
    Host Scientific Name Escherichia coli  
    Host Strain Blr(de3)plyss
    Host Vector Type Pkkt7 H


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 1453915     DNA polymerase IV DINP    
    - - 3474616     DNA polymerase IV POLIV