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SYK in COMPLEX WITH LIGAND LASW836
Biology and Chemistry Report
4F4P
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/TRANSFERASE INHIBITOR
    Text Tyrosine-protein kinase, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR complex

    Polymeric Molecules

    Chain A
    Description Tyrosine-protein kinase SYK 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 31593.7 
    Source Method genetically manipulated  
    Entity Name Spleen tyrosine kinase, p72-Syk 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    0SB  N-{6-[3-(piperazin-1-yl)phenyl]pyridin-2-yl}-4-(trifluoromethyl)pyridin-2-amine  C21 H20 F3 N5   399.41  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A KSYK_HUMAN P43405     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.10.2      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4713   Protein Tyrosine Kinase Activity  Catalysis of the Reaction: ATP + a Protein Tyrosine = Adp + Protein Tyrosine Phosphate. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene syk
    Host Scientific Name Escherichia coli  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    9 9q22 6850     spleen tyrosine kinase SYK    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs199772052 LS-SNP   dbSNP   A 367 R - > Q 3/10 Helix 27% (Intermediate) 9 93637050
    rs201179887 LS-SNP   dbSNP   A 375 K - > E Bend 80% (Exposed) 9 93637073
    rs79190821 LS-SNP   dbSNP   A 402 K - > E Beta Ladder 14% (Intermediate) 9 93639875 0SB
    rs201438493 LS-SNP   dbSNP   A 412 A - > ST Coil 39% (Exposed) 9 93639905
    rs200202947 LS-SNP   dbSNP   A 440 E - > K Beta Ladder 69% (Exposed) 9 93639989
    rs201930376 LS-SNP   dbSNP   A 470 N - > S Helix 4% (Buried) 9 93641063
    rs201724218 LS-SNP   dbSNP   A 478 V - > I Helix 0% (Buried) 9 93641086
    rs200456955 LS-SNP   dbSNP   A 482 M - > V Helix 0% (Buried) 9 93641098
    rs147125933 LS-SNP   dbSNP   A 483 K - > R Helix 20% (Intermediate) 9 93641102
    rs200320837 LS-SNP   dbSNP   A 520 R - > S Coil 62% (Exposed) 9 93641212
    rs199801793 LS-SNP   dbSNP   A 552 K - > R Helix 31% (Intermediate) 9 93650104
    rs201765057 LS-SNP   dbSNP   A 574 R - > P Turn 74% (Exposed) 9 93650170
    rs200438123 LS-SNP   dbSNP   A 603 D - > N Helix 56% (Exposed) 9 93650881
    rs200612476 LS-SNP   dbSNP   A 618 G - > R Coil 18% (Intermediate) 9 93657826
    rs139348511 LS-SNP   dbSNP   A 620 A - > T Helix 44% (Exposed) 9 93657832
    rs150998279 LS-SNP   dbSNP   A 628 N - > S Helix 49% (Exposed) 9 93657857