POP-OUT | CLOSE
 
Human Argonaute-2 - miR-20a complex
Biology and Chemistry Report
4F3T
  •   Structure Details   Hide

    Structure Keywords

    Keywords Hydrolase/RNA
    Text HYDROLASE/GENE REGULATION, RNAi, Slicer, RNA, Hydrolase-RNA complex

    Polymeric Molecules

    Chain A
    Description Protein argonaute-2 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 97479.1 
    Source Method genetically manipulated  
    Entity Name Argonaute2, hAgo2, Eukaryotic translation initiation factor 2C 2, eIF-2C 2, eIF2C 2, PAZ Piwi domain protein, PPD, Protein slicer 
    Chain R
    Description RNA (5'-R(P*UP*AP*AP*AP*GP*UP*GP*CP*UP*UP*AP*UP*AP*GP*UP*G*CP*AP*GP*G)-3') 
    Fragment GB bases 8-27 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 6448.9 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    IPH  PHENOL  C6 H6 O   94.11  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A AGO2_HUMAN Q8TCZ5     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    3.1.26      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    6417   Regulation of Translation  Any Process That Modulates the Frequency Rate or Extent of the Chemical Reactions and Pathways Resulting in the Formation of Proteins by the Translation of Mrna. 
    31047   Gene Silencing by RNA  Any Process in Which RNA Molecules Inactivate Expression of Target Genes. 
    60213   Positive Regulation of Nuclear Transcribed MRNA Poly(a) Tail Shortening  Any Process That Increases the Frequency Rate or Extent of Poly(a) Tail Shortening of a Nuclear Transcribed Mrna. Poly(a) Tail Shortening Is the Decrease in Length of the Poly(a) Tail of an MRNA From Full Length to an Oligo(a) Length. 
    1900153   Positive Regulation of Nuclear Transcribed MRNA Catabolic Process Deadenylation Dependent Decay  Any Process That Activates or Increases the Frequency Rate or Extent of Nuclear Transcribed MRNA Catabolic Process Deadenylation Dependent Decay. 
    932   Cytoplasmic MRNA Processing Body  A Focus in the Cytoplasm Where Mrnas May Become Inactivated by Decapping or Some Other Mechanism. MRNA Processing and Binding Proteins Are Localized to These Foci. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    30529   Ribonucleoprotein Complex  A Macromolecular Complex Containing Both Protein and RNA Molecules. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    4518   Nuclease Activity  Catalysis of the Hydrolysis of Ester Linkages Within Nucleic Acids. 
    4519   Endonuclease Activity  Catalysis of the Hydrolysis of Ester Linkages Within Nucleic Acids by Creating Internal Breaks. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Details Cleavable Two Strepsumo Tag (tss)
    Gene ago2, argonaute2, eif-2c 2, eif2c 2, eif2c2, eukaryotic translation initiation factor 2c 2, hago2, human argonaute-2, paz piwi domain protein
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf9
    Host Vector Type Baculovirus
    Host Plasmid Name pFL, MultiBac


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    8 8q24 27161     argonaute RISC catalytic component 2 AGO2    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs200483361 LS-SNP   dbSNP   A 75 V - > M Helix 5% (Buried) 8 141583024
    rs200933426 LS-SNP   dbSNP   A 88 G - > V Turn 44% (Exposed) 8 141582984
    rs199834249 LS-SNP   dbSNP   A 105 P - > S Coil 44% (Exposed) 8 141582934
    rs138745106 LS-SNP   dbSNP   A 213 M - > L Beta Ladder 1% (Buried) 8 141570491
    rs142560345 LS-SNP   dbSNP   A 291 H - > L Turn 65% (Exposed) 8 141568590
    rs139357710 LS-SNP   dbSNP   A 404 E - > G Bend 55% (Exposed) 8 141566053
    rs113589944 LS-SNP   dbSNP   A 413 L - > P Coil 2% (Buried) 8 141566026
    rs35369360 LS-SNP   dbSNP   A 536 G - > A Helix 0% (Buried) 8 141557708
    rs151129167 LS-SNP   dbSNP   A 597 D - > Y Beta Ladder 7% (Buried) 8 141554362
    rs145822330 LS-SNP   dbSNP   A 607 K - > M Coil 83% (Exposed) 8 141554331
    rs1137903 LS-SNP   dbSNP   A 681 H - > Y Helix 50% (Exposed) 8 141549547
    rs199839068 LS-SNP   dbSNP   A 687 I - > L Helix 0% (Buried) 8 141549529