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Crystal structure of YdiV and FlhD complex
Biology and Chemistry Report
4ES4
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSCRIPTION
    Text Flagellar regulation, TRANSCRIPTION

    Polymeric Molecules

    Chain A,C,E,G
    Description Putative cyclic di-GMP regulator CdgR 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 27070.3 
    Source Method genetically manipulated  
    Entity Name c-diGMP regulator 
    Chain B,D,F,H
    Description Flagellar transcriptional regulator FlhD 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13333.5 
    Source Method genetically manipulated  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,C,E,G YDIV_ECOLI P76204     
    B,D,F,H FLHD_ECOLI P0A8S9     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,C,E,G
    GO ID   Ontology GO Term Definition
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    43433   Negative Regulation of Sequence Specific DNA Binding Transcription Factor Activity  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of the Activity of a Transcription Factor Any Factor Involved in the Initiation or Regulation of Transcription. 
    1902201   Negative Regulation of Bacterial Type Flagellum Dependent Cell Motility  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of Bacterial Type Flagellum Dependent Cell Motility. 
    2000678   Negative Regulation of Transcription Regulatory Region DNA Binding  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of Transcription Regulatory Region DNA Binding. 
    8134   Transcription Factor Binding  Interacting Selectively and Non Covalently with a Transcription Factor Any Protein Required to Initiate or Regulate Transcription. 
    Chain B,D,F,H
    GO ID   Ontology GO Term Definition
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    44780   Bacterial Type Flagellum Assembly  The Assembly of a Bacterial Type Flagellum a Motor Complex Composed of an Extracellular Helical Protein Filament Coupled to a Rotary Motor Embedded in the Cell Envelope Which Functions in Cell Motility. 
    44781   Bacterial Type Flagellum Organization  A Process That Is Carried Out At the Cellular Level Which Results in the Assembly Arrangement of Constituent Parts or Disassembly of a Bacterial Type Flagellum a Motor Complex Composed of an Extracellular Helical Protein Filament Coupled to a Rotary Motor Embedded in the Cell Envelope Which Functions in Cell Motility. 
    45893   Positive Regulation of Transcription DNA Templated  Any Process That Activates or Increases the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    1902208   Regulation of Bacterial Type Flagellum Assembly  Any Process That Modulates the Frequency Rate or Extent of Bacterial Type Flagellum Assembly. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B,D,F,H
    Scientific Name Escherichia coli  
    Strain K12
    Gene flhd, flbb, b1892, jw1881
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET29b


    Chain A,C,E,G
    Scientific Name Escherichia coli  
    Strain K12
    Gene cdgr, ydiv, b1707, jw1697
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET15b