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Crystal structure of Autophagic E2, Atg10
Biology and Chemistry Report
4EBR
  •   Structure Details   Hide

    Structure Keywords

    Keywords ligase
    Text E2-Conjugating enzyme, Autophagy, ligase, protein binding, Atg3, Atg5, Atg7, Atg12, Thiolation

    Polymeric Molecules

    Chain A,B
    Description Ubiquitin-like-conjugating enzyme ATG10 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 20109.5 
    Source Method genetically manipulated  
    Entity Name Autophagy-related protein 10 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    HG  MERCURY (II) ION  Hg   200.59  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B ATG10_YEAST D6VXW4     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  6.3.2      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6810   Transport  The Directed Movement of Substances (such As Macromolecules Small Molecules Ions) Into Out of or Within a Cell or Between Cells or Within a Multicellular Organism by Means of Some Agent Such As a Transporter or Pore. 
    6914   Autophagy  The Process in Which Cells Digest Parts of Their Own Cytoplasm; Allows For Both Recycling of Macromolecular Constituents Under Conditions of Cellular Stress and Remodeling the Intracellular Structure For Cell Differentiation. 
    15031   Protein Transport  The Directed Movement of Proteins Into Out of or Within a Cell or Between Cells by Means of Some Agent Such As a Transporter or Pore. 
    16020   Membrane  Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    34045   Pre Autophagosomal Structure Membrane  A Cellular Membrane Associated with the Pre Autophagosomal Structure. 
    16874   Ligase Activity  Catalysis of the Joining of Two Substances or Two Groups Within a Single Molecule with the Concomitant Hydrolysis of the Diphosphate Bond in ATP or a Similar Triphosphate. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain ATCC 204508, S288C
    Gene atg10, apg10, yll042c
    Host Scientific Name Escherichia coli  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    XII - 850684     Atg10p ATG10