POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

Thymidine phosphorylase from E.coli with 3'-azido-2'-fluoro-dideoxyuridine
Biology and Chemistry Report
4EAD
  •   Structure Details   Hide

    Structure Keywords

    Keywords Transferase/Transferase inhibitor
    Text Thymidine phosphorylase, Transferase-Transferase inhibitor complex

    Polymeric Molecules

    Chain A
    Description Thymidine phosphorylase 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 47241.4 
    Source Method genetically manipulated  
    Entity Name TdRPase 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    0NP  2',3'-dideoxy-2'-fluoro-3'-triaza-1,2-dien-2-ium-1-yluridine  C9 H11 F N5 O4   272.21  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A TYPH_ECOLI P07650     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.4.2.4      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6206   Pyrimidine Nucleobase Metabolic Process  The Chemical Reactions and Pathways Involving Pyrimidine Nucleobases 1 3 Diazine Organic Nitrogenous Bases. 
    6213   Pyrimidine Nucleoside Metabolic Process  The Chemical Reactions and Pathways Involving Any Pyrimidine Nucleoside One of a Family of Organic Molecules Consisting of a Pyrimidine Base Covalently Bonded to Ribose (a Ribonucleoside) or Deoxyribose (a Deoxyribonucleoside). 
    6974   Cellular Response to DNA Damage Stimulus  Any Process That Results in a Change in State or Activity of a Cell (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Stimulus Indicating Damage to Its DNA From Environmental Insults or Errors During Metabolism. 
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    46104   Thymidine Metabolic Process  The Chemical Reactions and Pathways Involving Thymidine Deoxyribosylthymine Thymine 2 Deoxyriboside a Deoxynucleoside Very Widely Distributed But Occurring Almost Entirely As Phosphoric Esters in Deoxynucleotides and Deoxyribonucleic Acid Dna. 
    16020   Membrane  Double Layer of Lipid Molecules That Encloses All Cells and in Eukaryotes Many Organelles; May Be a Single or Double Lipid Bilayer; Also Includes Associated Proteins. 
    4645   Phosphorylase Activity  Catalysis of the Reaction: 1 4 Alpha D Glucosyl(n) + Phosphate = 1 4 Alpha D Glucosyl(n 1) + Alpha D Glucose 1 Phosphate. the Name Should Be Qualified in Each Instance by Adding the Name of the Natural Substrate E.g. Maltodextrin Phosphorylase Starch Phosphorylase Glycogen Phosphorylase. 
    9032   Thymidine Phosphorylase Activity  Catalysis of the Reaction: Thymidine + Phosphate = Thymine + 2 Deoxy D Ribose 1 Phosphate. 
    16154   Pyrimidine Nucleoside Phosphorylase Activity  Catalysis of the Reaction: Pyrimidine Nucleoside + Phosphate = Pyrimidine + Alpha D Ribose 1 Phosphate. 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 
    16757   Transferase Activity Transferring Glycosyl Groups  Catalysis of the Transfer of a Glycosyl Group From One Compound (donor) to Another (acceptor). 
    16763   Transferase Activity Transferring Pentosyl Groups  Catalysis of the Transfer of a Pentosyl Group From One Compound (donor) to Another (acceptor). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Scientific Name Escherichia coli  
    Strain K12
    Gene b4382, deoa, jw4345, tpp, ttg
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pER-Thy1.