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Structure of Peptide Deformylase form Helicobacter Pylori in complex with actinonin
Biology and Chemistry Report
4E9B
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE/HYDROLASE INHIBTIOR
    Text HYDROLASE-HYDROLASE INHIBTIOR complex

    Polymeric Molecules

    Chain A
    Description Peptide deformylase 11 
    Fragment UNP RESIDUES 2-164 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 21008.6 
    Source Method genetically manipulated  
    Entity Name PDF 11, Polypeptide deformylase 11 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    BB2  ACTINONIN  C19 H35 N3 O5   385.50  View 
    CO  COBALT (II) ION  Co   58.93  View 
    DMS  DIMETHYL SULFOXIDE  C2 H6 O S   78.13  View 
    EPE  4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID  C8 H18 N2 O4 S   238.31  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A Q672W7_HELPX Q672W7     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    3.5.1.88      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6412   Translation  The Cellular Metabolic Process in Which a Protein Is Formed Using the Sequence of a Mature MRNA Molecule to Specify the Sequence of Amino Acids in a Polypeptide Chain. Translation Is Mediated by the Ribosome and Begins with the Formation of a Ternary Complex Between Aminoacylated Initiator Methionine TRNA GTP and Initiation Factor 2 Which Subsequently Associates with the Small Subunit of the Ribosome and an Mrna. Translation Ends with the Release of a Polypeptide Chain From the Ribosome. 
    5506   Iron Ion Binding  Interacting Selectively and Non Covalently with Iron (fe) Ions. 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 
    42586   Peptide Deformylase Activity  Catalysis of the Reaction: Formyl L Methionyl Peptide + H2o = Formate + Methionyl Peptide. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Scientific Name Helicobacter pylori  
    Gene def, def11
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET22b