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An Information Portal to 105097 Biological Macromolecular Structures

ICAP1 in complex with KRIT1 N-terminus
Biology and Chemistry Report
4DX8
  •   Structure Details   Hide

    Structure Keywords

    Keywords PROTEIN BINDING
    Text Protein-protien complex, PTB domain, Nudix fold, Protein-protein interaction, Membrane, nucleus, PROTEIN BINDING

    Polymeric Molecules

    Chain A,B,D,E
    Description Integrin beta-1-binding protein 1 
    Fragment PTB domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16909.2 
    Source Method genetically manipulated  
    Entity Name Integrin cytoplasmic domain-associated protein 1, ICAP-1 
    Chain H,I,J,K
    Description Krev interaction trapped protein 1 
    Fragment Nudix domain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 22911.7 
    Source Method genetically manipulated  
    Entity Name Krev interaction trapped 1, Cerebral cavernous malformations 1 protein 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    BR  BROMIDE ION  Br   79.90  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,D,E ITBP1_HUMAN D6W4Y9     
    H,I,J,K KRIT1_HUMAN A6NNU0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain H,I,J,K
    Common Name Human
    Scientific Name Homo sapiens  
    Gene ccm1, krev interaction trapped protein 1 (krit1), krit1
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pGEX6p-1


    Chain A,B,D,E
    Common Name Human
    Scientific Name Homo sapiens  
    Gene icap1, integrin cytoplasmic domain-associated protein 1 (icap1), itgb1bp1
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET-32


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    2 2p25.2 9270     integrin beta 1 binding protein 1 ITGB1BP1    
    7 7q21.2 889     KRIT1, ankyrin repeat containing KRIT1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs150024997 LS-SNP   dbSNP   A 58 D - > N Coil 59% (Exposed) 2 9552514
    rs201349347 LS-SNP   dbSNP   A 76 L - > F Coil 54% (Exposed) 2 9552460
    rs148262207 LS-SNP   dbSNP   A 89 I - > M Helix 0% (Buried) 2 9552419
    rs145045333 LS-SNP   dbSNP   A 116 K - > Q Turn 10% (Intermediate) 2 9548277
    rs17850889 LS-SNP   dbSNP   A 150 A - > V Bend 72% (Exposed) 2 9547660
    rs62118841 LS-SNP   dbSNP   A 183 I - > N Helix 0% (Buried) 2 9547018
    rs199642720 LS-SNP   dbSNP   A 192 D - > E Helix 44% (Exposed) 2 9546990
    rs77066620 LS-SNP   dbSNP   H 17 P - > Q Beta Ladder 15% (Intermediate) 7 91871400
    rs34358665 LS-SNP   dbSNP   H 26 R - > Q Bend 64% (Exposed) 7 91871373
    rs148993606 LS-SNP   dbSNP   H 29 R - > K Coil 54% (Exposed) 7 91871364 BR
    rs116801031 LS-SNP   dbSNP   H 79 I - > V Coil 68% (Exposed) 7 91870334
    rs199905288 LS-SNP   dbSNP   H 98 P - > S Beta Ladder 46% (Exposed) 7 91867044
    rs147568834 LS-SNP   dbSNP   H 101 G - > V Bend 77% (Exposed) 7 91867034
    rs137853139 LS-SNP   dbSNP   H 137 D - > G Helix 53% (Exposed) 7 91865802
    rs145272953 LS-SNP   dbSNP   H 147 T - > I Coil 89% (Exposed) 7 91865772
    rs35350895 LS-SNP   dbSNP   H 167 R - > C Helix 22% (Intermediate) 7 91864947
    rs140396626 LS-SNP   dbSNP   H 197 T - > A Coil 120% (Exposed) 7 91864857