POP-OUT | CLOSE

An Information Portal to 105097 Biological Macromolecular Structures

Crystal structure of YU2 gp120 core in complex with Fab 48d and NBD-557
Biology and Chemistry Report
4DVR
  •   Structure Details   Hide

    Structure Keywords

    Keywords IMMUNE SYSTEM/TRANSCRIPTION INHIBITOR
    Text HIV-1 gp120, CD4 binding site, NBD-557, IMMUNE SYSTEM-TRANSCRIPTION INHIBITOR complex

    Polymeric Molecules

    Chain G
    Description glycoprotein gp120 
    Fragment unp residues 83-123; 199-301; 324-492 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 34918.9 
    Source Method genetically manipulated  
    Entity Name Env polyprotein, Surface protein gp120, SU, Glycoprotein 120, gp120, Transmembrane protein gp41, TM, Glycoprotein 41, gp41 
    Chain L
    Description Fab 48d Light chain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23092.8 
    Source Method genetically manipulated  
    Chain H
    Description Fab 48d Heavy chain 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23386.3 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    0LY  N-(4-bromophenyl)-N'-(2,2,6,6-tetramethylpiperidin-4-yl)ethanediamide  C17 H24 Br N3 O2   382.30  View 
    NAG  N-ACETYL-D-GLUCOSAMINE  C8 H15 N O6   221.21  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    G ENV_HV1Y2 P35961     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    Immune Epitopes (B-cell and T-Cell)

    Immune Epitope Database (IEDB)
    Epitope ID 226302    
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain G
    GO ID   Ontology GO Term Definition
    19031   Viral Envelope  The Lipid Bilayer of a Virion That Surrounds the Protein Capsid. May Also Contain Glycoproteins. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain H
    Scientific Name Homo sapiens  
    Host Scientific Name Homo sapiens  
    Host Strain Epstein Barr Virus


    Chain L
    Scientific Name Homo sapiens  
    Host Scientific Name Homo sapiens  
    Host Strain Epstein Barr Virus


    Chain G
    Common Name Hiv 1
    Scientific Name Human immunodeficiency virus type 1 (isolate yu2)  
    Strain CLADE B YU2
    Gene env, hiv-1 env
    Host Scientific Name Homo sapiens  
    Host Strain 293f
    Host Vector Type Plasmid
    Host Plasmid Name pVRC8400