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Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus
Biology and Chemistry Report
4DF0
  •   Structure Details   Hide

    Structure Keywords

    Keywords LYASE
    Text TIM barrel, orotidine 5'-monophosphate decarboxylase, LYASE

    Polymeric Molecules

    Chain A,B
    Description Orotidine 5'-phosphate decarboxylase 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 21952.7 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CL  CHLORIDE ION  Cl   35.45  View 
    NI  NICKEL (II) ION  Ni   58.69  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B B1Y9Q9_PYRNV B1Y9Q9     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6207   'de Novo' Pyrimidine Nucleobase Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Pyrimidine Nucleobases 1 3 Diazine Organic Nitrogenous Bases Beginning with the Synthesis of a Pyrimidine Ring From Simpler Precursors. 
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    4590   Orotidine 5' Phosphate Decarboxylase Activity  Catalysis of the Reaction: H(+) + Orotidine 5' Phosphate = Co(2) + Ump. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Thermoproteus neutrophilus  
    Strain DSM 2338 / JCM 9278 / V24STA
    Gene tneu_0023
    Host Scientific Name Escherichia coli