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Crystal structure of HIV-1 NEF Fyn-SH3 R96W variant
Biology and Chemistry Report
4D8D
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/PROTEIN BINDING
    Text signaling molecules, TRANSFERASE-PROTEIN BINDING complex

    Polymeric Molecules

    Chain A,C
    Description Tyrosine-protein kinase Fyn 
    Fragment SRC-HOMOLOGY 3 DOMAIN (UNP Residues 84-141) 
    Mutation R96W 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6652.3 
    Source Method genetically manipulated  
    Entity Name Proto-oncogene Syn, Proto-oncogene c-Fyn, Src-like kinase, SLK, p59-Fyn 
    Chain B,D
    Description Protein Nef 
    Fragment CONSERVED CORE DOMAIN (UNP Residues 58-204) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17568.9 
    Source Method genetically manipulated  
    Entity Name 3'ORF, Negative factor, F-protein, C-terminal core protein 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,C FYN_HUMAN B5BU57     
    B,D NEF_HV1BR P03406     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A C  2.7.10.2      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain B,D
    GO ID   Ontology GO Term Definition
    5525   GTP Binding  Interacting Selectively and Non Covalently with GTP Guanosine Triphosphate. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain B,D
    Common Name Hiv 1
    Scientific Name Human immunodeficiency virus type 1  
    Strain LAI-BRU ISOLATE
    Gene nef
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3)
    Host Vector Type Pgex 2t


    Chain A,C
    Common Name Human
    Scientific Name Homo sapiens  
    Gene fyn, fyn tyrosine kinase
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3)
    Host Vector Type Pgex 2t


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6q21 2534     FYN proto-oncogene, Src family tyrosine kinase FYN