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Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, Form 1
Biology and Chemistry Report
4C2U
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE/DNA
    Text HYDROLASE-DNA COMPLEX, DNA REPAIR, DNA HELICASES, NUCLEOTIDE EXCISION REPAIR

    Polymeric Molecules

    Chain A,D
    Description DNA HELICASE II 
    Fragment C-TERMINAL TRUNCATION, RESIDUES 1-665 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 74101.2 
    Source Method genetically manipulated  
    Entity Name UVRD 
    Chain X
    Description REV25 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 7616.0 
    Source Method synthetic  
    Chain Y
    Description FOR25 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 7678.0 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ANP  PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER  C10 H17 N6 O12 P3   506.20  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
    NA  SODIUM ION  Na   22.99  View 
    NO3  NITRATE ION  N O3   62.01  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,D Q9RTI9_DEIRA Q9RTI9     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A D  3.6.4.12      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,D
    GO ID   Ontology GO Term Definition
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    4003   ATP Dependent DNA Helicase Activity  Catalysis of the Reaction: ATP + H2o = Adp + Phosphate; This Reaction Drives the Unwinding of the DNA Helix. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,D
    Scientific Name Deinococcus radiodurans  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Pet151d
    Host Vector Type Plasmid