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Crystal structure of full length Deinococcus radiodurans UvrD in complex with DNA
Biology and Chemistry Report
4C2T
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE/DNA
    Text HYDROLASE-DNA COMPLEX, DNA REPAIR, DNA HELICASES, NUCLEOTIDE EXCISION REPAIR

    Polymeric Molecules

    Chain A,B,C,D
    Description DNA HELICASE II 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 82708.2 
    Source Method genetically manipulated  
    Entity Name UVRD 
    Chain M,P
    Description DNA STRAND FOR28 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 8569.6 
    Source Method synthetic  
    Chain N,O
    Description DNA STRAND REV28 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 8578.6 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ANP  PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER  C10 H17 N6 O12 P3   506.20  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D Q9RTI9_DEIRA Q9RTI9     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B C D  3.6.4.12      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D
    GO ID   Ontology GO Term Definition
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    4386   Helicase Activity  Catalysis of the Reaction: Ntp + H2o = Ndp + Phosphate to Drive the Unwinding of a DNA or RNA Helix. 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D
    Scientific Name Deinococcus radiodurans  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Pet151d
    Host Vector Type Plasmid