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An Information Portal to 105025 Biological Macromolecular Structures

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH 8-HYDROXYQUINOLINE-5- CARBOXYLIC ACID
Biology and Chemistry Report
4BIO
  •   Structure Details   Hide

    Structure Keywords

    Keywords OXIDOREDUCTASE
    Text OXIDOREDUCTASE, DIOXYGENASE, OXYGENASE, DNA-BINDING, METAL-BINDING, TRANSCRIPTION, HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, ASPARAGINYL/ASPARTYL HYDROXYLASE, TRANSCRIPTION AND EPIGENETIC REGULATION, SIGNALING, DEVELOPMENT, CELL STRUCTURE, ANKYRIN REPEAT DOMAIN, ARD, BETA-HYDROXYLATION, TRANSCRIPTION ACTIVATOR/INHIBITOR, PHOSPHORYLATION, S-NITROSYLATION

    Polymeric Molecules

    Chain A
    Description HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 40611.0 
    Source Method genetically manipulated  
    Entity Name FACTOR INHIBITING HIF, FACTOR INHIBITING HIF-1, FIH-1, HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    8XQ  8-hydroxyquinoline-5-carboxylic acid  C10 H7 N O3   189.17  View 
    FE  FE (III) ION  Fe   55.85  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A HIF1N_HUMAN D3DR69     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    1.14.11.30      
    1.14.11.n4      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    6351   Transcription DNA Templated  The Cellular Synthesis of RNA On a Template of Dna. 
    6355   Regulation of Transcription DNA Templated  Any Process That Modulates the Frequency Rate or Extent of Cellular DNA Templated Transcription. 
    36138   Peptidyl Histidine Hydroxylation  The Hydroxylation of Peptidyl Histidine to Form Peptidyl Hydroxyhistidine. 
    42264   Peptidyl Aspartic Acid Hydroxylation  The Hydroxylation of Peptidyl Aspartic Acid to Form Peptidyl Hydroxyaspartic Acid. 
    42265   Peptidyl Asparagine Hydroxylation  The Hydroxylation of Peptidyl Asparagine to Form Peptidyl Hydroxyasparagine. 
    45663   Positive Regulation of Myoblast Differentiation  Any Process That Activates or Increases the Frequency Rate or Extent of Myoblast Differentiation. a Myoblast Is a Mononucleate Cell Type That by Fusion with Other Myoblasts Gives Rise to the Myotubes That Eventually Develop Into Skeletal Muscle Fibers. 
    45746   Negative Regulation of Notch Signaling Pathway  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of the Notch Signaling Pathway. 
    55114   Oxidation Reduction Process  A Metabolic Process That Results in the Removal or Addition of One or More Electrons to or From a Substance with or Without the Concomitant Removal or Addition of a Proton or Protons. 
    61418   Regulation of Transcription From RNA Polymerase Ii Promoter in Response to Hypoxia  Any Process That Modulates the Frequency Rate or Extent of Transcription From an RNA Polymerase Ii Promoter As a Result of a Hypoxia Stimulus. 
    61428   Negative Regulation of Transcription From RNA Polymerase Ii Promoter in Response to Hypoxia  Any Process That Decreases the Frequency Rate or Extent of Transcription From an RNA Polymerase Ii Promoter As a Result of a Hypoxia Stimulus. 
    71456   Cellular Response to Hypoxia  Any Process That Results in a Change in State or Activity of a Cell (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Stimulus Indicating Lowered Oxygen Tension. Hypoxia Defined As a Decline in O2 Levels Below Normoxic Levels of 20.8 20.95% Results in Metabolic Adaptation At Both the Cellular and Organismal Level. 
    2001214   Positive Regulation of Vasculogenesis  Any Process That Activates or Increases the Frequency Rate or Extent of Vasculogenesis. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5730   Nucleolus  A Small Dense Body One or More of Which Are Present in the Nucleus of Eukaryotic Cells. It Is Rich in RNA and Protein Is Not Bounded by a Limiting Membrane and Is Not Seen During Mitosis. Its Prime Function Is the Transcription of the Nucleolar DNA Into 45s Ribosomal Precursor RNA the Processing of This RNA Into 5.8s 18s and 28s Components of Ribosomal RNA and the Association of These Components with 5s RNA and Proteins Synthesized Outside the Nucleolus. This Association Results in the Formation of Ribonucleoprotein Precursors; These Pass Into the Cytoplasm and Mature Into the 40s and 60s Subunits of the Ribosome. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5829   Cytosol  The Part of the Cytoplasm That Does Not Contain Organelles But Which Does Contain Other Particulate Matter Such As Protein Complexes. 
    48471   Perinuclear Region of Cytoplasm  Cytoplasm Situated Near or Occurring Around the Nucleus. 
    5112   Notch Binding  Interacting Selectively and Non Covalently with the Notch (n) Protein a Surface Receptor. 
    5506   Iron Ion Binding  Interacting Selectively and Non Covalently with Iron (fe) Ions. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    8270   Zinc Ion Binding  Interacting Selectively and Non Covalently with Zinc (zn) Ions. 
    16491   Oxidoreductase Activity  Catalysis of an Oxidation Reduction (redox) Reaction a Reversible Chemical Reaction in Which the Oxidation State of an Atom or Atoms Within a Molecule Is Altered. One Substrate Acts As a Hydrogen or Electron Donor and Becomes Oxidized While the Other Acts As Hydrogen or Electron Acceptor and Becomes Reduced. 
    16706   Oxidoreductase Activity Acting On Paired Donors with Incorporation or Reduction of Molecular Oxygen 2 Oxoglutarate As One Donor and Incorporation of One Atom Each of Oxygen Into Both Donors  Catalysis of the Reaction: a + 2 Oxoglutarate + O2 = B + Succinate + Co2. This Is an Oxidation Reduction (redox) Reaction in Which Hydrogen or Electrons Are Transferred From 2 Oxoglutarate and One Other Donor and One Atom of Oxygen Is Incorporated Into Each Donor. 
    19826   Oxygen Sensor Activity  Interacting Selectively and Non Covalently with and Responding E.g. by Conformational Change to Changes in the Cellular Level of Oxygen (o2). 
    31406   Carboxylic Acid Binding  Interacting Selectively and Non Covalently with a Carboxylic Acid Any Organic Acid Containing One or More Carboxyl (cooh) Groups or Anions (coo ). 
    36139   Peptidyl Histidine Dioxygenase Activity  Catalysis of the Reaction: Peptidyl L Histidine + 2 Oxoglutarate + O2 = Peptidyl Hydroxy L Histidine + Succinate + Co2. 
    36140   Peptidyl Asparagine 3 Dioxygenase Activity  Catalysis of the Reaction: Peptidyl L Asparagine + 2 Oxoglutarate + O2 = Peptidyl 3 Hydroxy L Asparagine + Succinate + Co2. 
    42803   Protein Homodimerization Activity  Interacting Selectively and Non Covalently with an Identical Protein to Form a Homodimer. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 
    48037   Cofactor Binding  Interacting Selectively and Non Covalently with a Cofactor a Substance That Is Required For the Activity of an Enzyme or Other Protein. Cofactors May Be Inorganic Such As the Metal Atoms Zinc Iron and Copper in Certain Forms or Organic in Which Case They Are Referred to As Coenzymes. Cofactors May Either Be Bound Tightly to Active Sites or Bind Loosely with the Substrate. 
    51059   Nf Kappab Binding  Interacting Selectively and Non Covalently with Nf Kappab a Transcription Factor For Eukaryotic RNA Polymerase Ii Promoters. 
    51213   Dioxygenase Activity  Catalysis of an Oxidation Reduction (redox) Reaction in Which Both Atoms of Oxygen From One Molecule of O2 Are Incorporated Into the (reduced) Product(s) of the Reaction. the Two Atoms of Oxygen May Be Distributed Between Two Different Products. 
    71532   Ankyrin Repeat Binding  Interacting Selectively and Non Covalently with an Ankyrin Repeat of a Protein. Ankyrin Repeats Are Tandemly Repeated Modules of About 33 Amino Acids; Each Repeat Folds Into a Helix Loop Helix Structure with a Beta Hairpin/loop Region Projecting Out From the Helices At a 90 Degree Angle and Repeats Stack to Form an L Shaped Structure. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Pet28a
    Host Vector Type Plasmid


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    10 10q24 55662     hypoxia inducible factor 1, alpha subunit inhibitor HIF1AN    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs2295778 LS-SNP   dbSNP   A 41 P - > A Beta Ladder 51% (Exposed) 10 102295836
    rs199949653 LS-SNP   dbSNP   A 90 F - > L Coil 5% (Buried) 10 102296260
    rs146360800 LS-SNP   dbSNP   A 129 V - > F Helix 5% (Buried) 10 102296375
    rs147628176 LS-SNP   dbSNP   A 160 M - > V Helix 73% (Exposed) 10 102300440
    rs201041421 LS-SNP   dbSNP   A 177 R - > H Turn 12% (Intermediate) 10 102300492
    rs200501474 LS-SNP   dbSNP   A 185 N - > S Beta Ladder 5% (Buried) 10 102300516
    rs199568792 LS-SNP   dbSNP   A 229 P - > A Beta 13% (Intermediate) 10 102304815
    rs138370363 LS-SNP   dbSNP   A 297 Y - > H Beta Ladder 0% (Buried) 10 102306333