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Crystal structure of the CXXC and PHD domain of Human Lysine-specific Demethylase 2A (KDM2A)(FBXL11)
Biology and Chemistry Report
4BBQ
  •   Structure Details   Hide

    Structure Keywords

    Keywords OXIDOREDUCTASE
    Text OXIDOREDUCTASE, UBIQUITIN, LIGASE, UBIQUITINATION, DEMETHYLATION, ZF-CXXC DNA BINDING DOMAIN, CPG ISLAND, CHROMATIN, KDM2A, FBXL11

    Polymeric Molecules

    Chain A,B
    Description LYSINE-SPECIFIC DEMETHYLASE 2A 
    Fragment CXXC AND PHD DOMAIN, RESIDUES 567-681 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13319.5 
    Source Method genetically manipulated  
    Entity Name CXXC-TYPE ZINC FINGER PROTEIN 8, F-BOX AND LEUCINE-RICH REPEAT PROTEIN 11, F-BOX PROTEIN FBL7, F-BOX PROTEIN LILINA, F-BOX/LRR-REPEAT PROTEIN 11, JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1A, [HISTONE-H3]-LYSINE-36 DEMETHYLASE 1A 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    EDO  1,2-ETHANEDIOL  C2 H6 O2   62.07  View 
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B KDM2A_HUMAN D4QA03     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  1.14.11.27      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    3677   DNA Binding  Any Molecular Function by Which a Gene Product Interacts Selectively and Non Covalently with DNA (deoxyribonucleic Acid). 
    8270   Zinc Ion Binding  Interacting Selectively and Non Covalently with Zinc (zn) Ions. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Host Scientific Name Escherichia coli  
    Host Variant R3 Prare2
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name PNIC28-BSA4


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    11 11q13.2 22992     lysine (K)-specific demethylase 2A KDM2A