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B. subtilis dUTPase YncF in complex with dU PPi and Mg in H32
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE

    Polymeric Molecules

    Chain A,B,C,D
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16431.9 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    DUR  2'-DEOXYURIDINE  C9 H12 N2 O5   228.20  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
    PO4  PHOSPHATE ION  O4 P   94.97  View 
    POP  PYROPHOSPHATE 2-  H2 O7 P2   175.96  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D YNCF_BACSU O31801     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B C D      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C,D
    GO ID   Ontology GO Term Definition
    6226   Dump Biosynthetic Process  The Chemical Reactions and Pathways Resulting in the Formation of Dump Deoxyuridine Monophosphate (2' Deoxyuridine 5' Phosphate). 
    9117   Nucleotide Metabolic Process  The Chemical Reactions and Pathways Involving a Nucleotide a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Glycose Moiety; May Be Mono Di or Triphosphate; This Definition Includes Cyclic Nucleotides (nucleoside Cyclic Phosphates). 
    46080   Dutp Metabolic Process  The Chemical Reactions and Pathways Involving Dutp Deoxyuridine (5' )triphosphate. 
    4170   Dutp Diphosphatase Activity  Catalysis of the Reaction: Dutp + H2o = Dump + Diphosphate. 
    16787   Hydrolase Activity  Catalysis of the Hydrolysis of Various Bonds E.g. C O C N C C Phosphoric Anhydride Bonds Etc. Hydrolase Is the Systematic Name For Any Enzyme of EC Class 3. 
    46872   Metal Ion Binding  Interacting Selectively and Non Covalently with Any Metal Ion. 

  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D
    Scientific Name Bacillus subtilis  
    Host Scientific Name Escherichia coli  

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 939541     deoxyuridine 5'-triphosphate nucleotidohydrolase YncF YNCF